Research Article
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Year 2021, Volume: 22 Issue: 2, 134 - 147, 29.06.2021
https://doi.org/10.18038/estubtda.765047

Abstract

References

  • [1] Zielonka J, Sikora A, Hardy M, Joseph J, Dranka BP, Kalyanaraman B. Boronate probes as diagnostic tools for real time monitoring of peroxynitrite and hydroperoxides. Chem Res Toxicol 2012; 25: 1793-1799.
  • [2] Barth RF, Mi P, Yang W. Boron delivery agents for neutron capture therapy of cancer. Canc Commun 2018; 38: 35: 1-15.
  • [3] Antonio JPM, Russo R, Carvalho CP, Cal P, Gois PMP. Boronic acids as building blocks for the construction of therapeutically useful bioconjugates. Chem Soc Rev 2019; 48: 3513-3536.
  • [4] Brooks WL., Sumerlin, BS. Synthesis and applications of boronic acidcontaining polymers: from materials to medicine. Chem Rev 2016; 116: 1375-1397.
  • [5] Hall DG. Boronic acid catalysis. Chem Soc Rev 2019; 48: 3475-3496
  • [6] Alam F, Soloway AH, Barth RF, Mafune N, Adam DM, Knoth WH. Boron Neutron Capture Therapy: Linkage of a Boronated Macromolecule to Monoclonal Antibodies Directed against Tumor-Associated Antigens. J Med Chem 1989; 32: 2326-2330
  • [7] Plescia J, Moitessier N. Design and discovery of boronic acid drugs. European Journal of Medicinal Chemistry 2020; 195: 112270
  • [8] Martin AR, Vasseur JJ, Smietana M. Boron and nucleic acid chemistries: merging the best of both worlds. Chem Soc Rev 2013; 42: 5684-5713
  • [9] Dikmen G, Alver Ö, Parlak C. NMR determination of solvent dependent behavior and XRD structural properties of 4-carboxy phenylboronic acid: A DFT supported study. Chem Phys Lett 2018; 698: 114-119.
  • [10] Alver Ö, Dikmen G. NMR, FT-IR, Raman and UV–Vis spectroscopic investigation and DFT study of 6-Bromo-3-Pyridinyl Boronic Acid. J Mol Struct 2015; 1099: 625-632
  • [11] Alver Ö, Dikmen G. Structure analysis and spectroscopic characterization of 2-Fluoro-3-Methylpyridine-5-Boronic Acid with experimental (FT-IR, Raman, NMR and XRD) techniques and quantum chemical calculations. J Mol Struct 2016; 1108: 103-111
  • [12] Cyranski MK, Jezierska A, Klimentowska P, Panek JJ, Sporzynski A. Structural and spectroscopic properties of an aliphatic boronic acid studied by combination of experimental and theoretical methods. J Chem Phys 2008; 128: 124512-124518
  • [13] Cyranski MK, Jezierska A, Klimentowska P, Sporzynski JJ, Panek A. Impact of intermolecular hydrogen bond on structurtal properties of phenylboronic acid: quantum chemical and X-ray study. J Phys Org Chem 2008; 21: 472-482
  • [14] Faniran JA, Shurvell HF. Infrared spectra of phenylboronic acids (normal and deuterated) and diphenyl phenylboronate. Can J Chem 1968; 46: 2089-2094.
  • [15] Dikmen G. 4-Methyl-1H-Indazole-5-Boronic acid: Crystal structure, vibrational spectra and DFT simulations. J Mol. Struct 2017; 1150: 299-306.
  • [16] Vega A, Zarate M, Tlahuext H, Höpfl H. 3-Aminophenylboronic acid monohydrate. Acta Cryst E 2010; 66: 1260-1268.
  • [17] Frisch, MJ, et al., Gaussian 09, Revision A. 1, Gaussian, Inc, Wallingford, CT, 2009.
  • [18] Dennington RD, Keith TA, Millam JM. GaussView 5.0.8., Gaussian Inc., 2008.
  • [19] Rauhut G, Pulay P. Transferable scaling factors for density functional derived vibrational force fields. J Phys Chem A 99 (10) (1995), 3093-3100.
  • [20] Baker J, Jarzecki AA, Pulay P. Direct scaling of primitive valence force constants: an alternative approach to scaled quantum mechanical force fields. J Phys Chem A 1998; 102(8): 1412-1424.
  • [21] Krishnakumar V, Muthunatesan S. DFT studies of the structure and vibrational assignments of 4-hydroxy quinazoline and 2-hydroxy benzimidazole. Spectrochim Acta A 2007; 66: 1082-1090.
  • [22] Benzon KB, Mary YS, Varghese HT, Panicker CY, Armakovi S, Armakovi SJ, Pradhan K, Nanda AK, Alsenoy CV. Spectroscopic, DFT, molecular dynamics and molecular docking study of 1-butyl-2-(4-hydroxyphenyl)-4,5-dimethyl-imidazole 3-oxide. J Mol Struct 2017; 1134: 330-344.
  • [23] Colthup NB, Daly LH, Wiberley S. E. Introduction to infrared and Raman spectroscopy. New York:Academic Press, 1964.
  • [24] Murali MK, Balachandran V. FT-IR, FT-Raman, DFT structure, vibrational frequency analysis and Mulliken charges of 2-chlorophenylisothiocyanate.Indian J Pure Appl Phys 2012; 50: 19-25
  • [25] Wang Y, Saebo S, Pittman CU. The structure of aniline by ab initio studies. J Mol Struct 1993; 281: 91-98.
  • [26] Silverstein M, Basseler GC, Morill C. Spectrometric Identification of Organic Compounds, Wiley, New York, 2001.
  • [27] Arjuvan V, Saravanan I, Ravindran P, Mohan S. Spectrochim. Acta A 2009; 74: 375-384.
  • [28] Kheirjou S, Abedin A, Fattahi A. Theoretical descriptors response to the calculations of the relative pK a values of some boronic acids in aqueous solution: a DFT study. Comput Theor Chem 2012; 1000: 1-5
  • [29] Jin S, Wang B. A novel redox-sensitive protecting group for boronic acids, MPMP-diol. Tetrahedron Lett 2005; 46: 8503-8505.
  • [30] Lee SY. Molecular structure and vibrational spectra of biphenyl in the ground and the lowest triplet states. Density functional theory study. Bull Korean Chem Soc 1998; 19 (1): 93-98.
  • [31] Burkholder TR, Andrews L. Reactions of boron atoms with molecular oxygen. Infrared spectra of BO, BO2, B2O2, B2O3 and BO2- in solid argon. C Chem Phys 1991; 95: 86-97.
  • [32] Cyranski MK, Jezierska A, Klimentowska P, Panek JJ, Sporzynski A. Structural and spectroscopic properties of an aliphatic boronic acid studied by combination of experimental and theoretical methods. J Chem Phys 2008; 128: 124512-124518.
  • [33] Bradley DC, Harding IS, Keefe AD, Motevalli M, Zheng DH. Reversible adduct formation between phosphines and triarylboron compounds. J Chem Soc Dalton Trans 1996; 20: 3931-3936.

VIBRATIONAL STUDIES OF MONOMER, DIMER AND TRIMER STRUCTURES OF 4-CARBOXY PHENYLBORONIC ACID

Year 2021, Volume: 22 Issue: 2, 134 - 147, 29.06.2021
https://doi.org/10.18038/estubtda.765047

Abstract

4-Carboxy Phenylboronic acid (4-cpba) was investigated theoretically and experimentally by spectroscopic methods such as FT-IR and Raman. The molecular structure and spectroscopic parameters were determined by computational methods. The molecular dimer1, dimer2 and trimer structures were investigated for intermolecular hydrogen bonding. Moreover, minimum conformational energy search was carried out by potantial energy surface (PES). Potential energy distribution analysis of normal modes was performed to identify characteristic frequencies. The findings of this research work should be useful to experimentalists in their quests for functionalised 4-cpba derivatives.

References

  • [1] Zielonka J, Sikora A, Hardy M, Joseph J, Dranka BP, Kalyanaraman B. Boronate probes as diagnostic tools for real time monitoring of peroxynitrite and hydroperoxides. Chem Res Toxicol 2012; 25: 1793-1799.
  • [2] Barth RF, Mi P, Yang W. Boron delivery agents for neutron capture therapy of cancer. Canc Commun 2018; 38: 35: 1-15.
  • [3] Antonio JPM, Russo R, Carvalho CP, Cal P, Gois PMP. Boronic acids as building blocks for the construction of therapeutically useful bioconjugates. Chem Soc Rev 2019; 48: 3513-3536.
  • [4] Brooks WL., Sumerlin, BS. Synthesis and applications of boronic acidcontaining polymers: from materials to medicine. Chem Rev 2016; 116: 1375-1397.
  • [5] Hall DG. Boronic acid catalysis. Chem Soc Rev 2019; 48: 3475-3496
  • [6] Alam F, Soloway AH, Barth RF, Mafune N, Adam DM, Knoth WH. Boron Neutron Capture Therapy: Linkage of a Boronated Macromolecule to Monoclonal Antibodies Directed against Tumor-Associated Antigens. J Med Chem 1989; 32: 2326-2330
  • [7] Plescia J, Moitessier N. Design and discovery of boronic acid drugs. European Journal of Medicinal Chemistry 2020; 195: 112270
  • [8] Martin AR, Vasseur JJ, Smietana M. Boron and nucleic acid chemistries: merging the best of both worlds. Chem Soc Rev 2013; 42: 5684-5713
  • [9] Dikmen G, Alver Ö, Parlak C. NMR determination of solvent dependent behavior and XRD structural properties of 4-carboxy phenylboronic acid: A DFT supported study. Chem Phys Lett 2018; 698: 114-119.
  • [10] Alver Ö, Dikmen G. NMR, FT-IR, Raman and UV–Vis spectroscopic investigation and DFT study of 6-Bromo-3-Pyridinyl Boronic Acid. J Mol Struct 2015; 1099: 625-632
  • [11] Alver Ö, Dikmen G. Structure analysis and spectroscopic characterization of 2-Fluoro-3-Methylpyridine-5-Boronic Acid with experimental (FT-IR, Raman, NMR and XRD) techniques and quantum chemical calculations. J Mol Struct 2016; 1108: 103-111
  • [12] Cyranski MK, Jezierska A, Klimentowska P, Panek JJ, Sporzynski A. Structural and spectroscopic properties of an aliphatic boronic acid studied by combination of experimental and theoretical methods. J Chem Phys 2008; 128: 124512-124518
  • [13] Cyranski MK, Jezierska A, Klimentowska P, Sporzynski JJ, Panek A. Impact of intermolecular hydrogen bond on structurtal properties of phenylboronic acid: quantum chemical and X-ray study. J Phys Org Chem 2008; 21: 472-482
  • [14] Faniran JA, Shurvell HF. Infrared spectra of phenylboronic acids (normal and deuterated) and diphenyl phenylboronate. Can J Chem 1968; 46: 2089-2094.
  • [15] Dikmen G. 4-Methyl-1H-Indazole-5-Boronic acid: Crystal structure, vibrational spectra and DFT simulations. J Mol. Struct 2017; 1150: 299-306.
  • [16] Vega A, Zarate M, Tlahuext H, Höpfl H. 3-Aminophenylboronic acid monohydrate. Acta Cryst E 2010; 66: 1260-1268.
  • [17] Frisch, MJ, et al., Gaussian 09, Revision A. 1, Gaussian, Inc, Wallingford, CT, 2009.
  • [18] Dennington RD, Keith TA, Millam JM. GaussView 5.0.8., Gaussian Inc., 2008.
  • [19] Rauhut G, Pulay P. Transferable scaling factors for density functional derived vibrational force fields. J Phys Chem A 99 (10) (1995), 3093-3100.
  • [20] Baker J, Jarzecki AA, Pulay P. Direct scaling of primitive valence force constants: an alternative approach to scaled quantum mechanical force fields. J Phys Chem A 1998; 102(8): 1412-1424.
  • [21] Krishnakumar V, Muthunatesan S. DFT studies of the structure and vibrational assignments of 4-hydroxy quinazoline and 2-hydroxy benzimidazole. Spectrochim Acta A 2007; 66: 1082-1090.
  • [22] Benzon KB, Mary YS, Varghese HT, Panicker CY, Armakovi S, Armakovi SJ, Pradhan K, Nanda AK, Alsenoy CV. Spectroscopic, DFT, molecular dynamics and molecular docking study of 1-butyl-2-(4-hydroxyphenyl)-4,5-dimethyl-imidazole 3-oxide. J Mol Struct 2017; 1134: 330-344.
  • [23] Colthup NB, Daly LH, Wiberley S. E. Introduction to infrared and Raman spectroscopy. New York:Academic Press, 1964.
  • [24] Murali MK, Balachandran V. FT-IR, FT-Raman, DFT structure, vibrational frequency analysis and Mulliken charges of 2-chlorophenylisothiocyanate.Indian J Pure Appl Phys 2012; 50: 19-25
  • [25] Wang Y, Saebo S, Pittman CU. The structure of aniline by ab initio studies. J Mol Struct 1993; 281: 91-98.
  • [26] Silverstein M, Basseler GC, Morill C. Spectrometric Identification of Organic Compounds, Wiley, New York, 2001.
  • [27] Arjuvan V, Saravanan I, Ravindran P, Mohan S. Spectrochim. Acta A 2009; 74: 375-384.
  • [28] Kheirjou S, Abedin A, Fattahi A. Theoretical descriptors response to the calculations of the relative pK a values of some boronic acids in aqueous solution: a DFT study. Comput Theor Chem 2012; 1000: 1-5
  • [29] Jin S, Wang B. A novel redox-sensitive protecting group for boronic acids, MPMP-diol. Tetrahedron Lett 2005; 46: 8503-8505.
  • [30] Lee SY. Molecular structure and vibrational spectra of biphenyl in the ground and the lowest triplet states. Density functional theory study. Bull Korean Chem Soc 1998; 19 (1): 93-98.
  • [31] Burkholder TR, Andrews L. Reactions of boron atoms with molecular oxygen. Infrared spectra of BO, BO2, B2O2, B2O3 and BO2- in solid argon. C Chem Phys 1991; 95: 86-97.
  • [32] Cyranski MK, Jezierska A, Klimentowska P, Panek JJ, Sporzynski A. Structural and spectroscopic properties of an aliphatic boronic acid studied by combination of experimental and theoretical methods. J Chem Phys 2008; 128: 124512-124518.
  • [33] Bradley DC, Harding IS, Keefe AD, Motevalli M, Zheng DH. Reversible adduct formation between phosphines and triarylboron compounds. J Chem Soc Dalton Trans 1996; 20: 3931-3936.
There are 33 citations in total.

Details

Primary Language English
Journal Section Articles
Authors

Gökhan Dikmen 0000-0003-0304-3527

Özgür Alver 0000-0003-0647-4242

Publication Date June 29, 2021
Published in Issue Year 2021 Volume: 22 Issue: 2

Cite

AMA Dikmen G, Alver Ö. VIBRATIONAL STUDIES OF MONOMER, DIMER AND TRIMER STRUCTURES OF 4-CARBOXY PHENYLBORONIC ACID. Estuscience - Se. June 2021;22(2):134-147. doi:10.18038/estubtda.765047