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Polymorphism of stearoyl-CoA desaturase (SCD) gene in Hereford cattle breed

Year 2019, , 247 - 253, 18.06.2019
https://doi.org/10.29050/harranziraat.487490

Abstract

In this study, Stearoyl CoA Desaturase (SCD) gene polymorphism was
determined in Hereford cattle breed. A702G, T762C and C878T single nükleotid
polymorfphisms (SNPs) have been identified based on DNA sequence information of
exon V region in SCD gene. AA, AG and GG genotype frequencies were 20.69%,
44.83% and 34.45% in A702G region, and TT, TC and CC genotype frequencies were
13.79%, 62.07% and 24.14% T762C region, and CC, CT and TT genotype frequencies
were %44.83, 31.03 and 24.14
in C878T region, respectively. In addition, A and G
allele frequencies were 0.431 and 0.569 in A702G region, T and C allele
frequencies were 0.448 and 0.552
in T762C region, and C and T allele frequencies were
0.603 and 0.397 in
C878T region, respectively. In addition, it was found that the population was
not at Hardy-Weinberg equilibrium in terms of related SNP genotypes.

References

  • Bölükbaşı, C., Erhan, M.K., Çelebi, Ş. 2005. The effects of dietary conjugated linoleic acid (CLA),sunflower oil and soybean oil on fatty acid composition of yolk and egg quality in laying hen. J. Food. Tech. 3(3): 427-429.
  • Chung, M., Ha, S., Jeong, S., Bok, J., Che, K., Baik, M., Choi, Y. 2000. Clonning and characterization of bovine Stearoyl CoA desaturase cDNA from adipose tissues. Bioscience, Biotechnology and Biochemistry, 64: 1526-1530.
  • Conte, G., Mele, M., Castiglinoni, B., Serra, A., Viva, M., Chessa, S., Pagnacco, G., Secchiari, P. 2006. Relationship between bovine SCD polymorphism locus and mammary gland desaturation activity. In: Procceedings of the 8th World congress on genetics applied to livestock prodiction. Belo Horizonte, Minas Gerais, Brazil,13-18 August, Pp. 22-37.
  • Elmas, H., Koncagül, S., Kiraz, S. 2015. Sığırlarda SCD (stearoyl-coa desaturase) geni. GAP VII. Tarım Kongresi Bildiri Kitabı, 28 Nisan -01 Mayıs. HRÜ. Şanlıurfa.
  • Kgwatalala, P.M., Ibeagha-Awemu, E.M., Mustafa, A.F., Zhao, X. 2009. Influence of Stearoyl coenzyme a desaturase 1 genotype and stage of lactation on fatty acid composition jersey cows. Journal of Dairy Sciences, 92: 1220-1228.
  • Köknaroğlu, H. 2007. Beslemenin sığır eti konjuge linoleik asit miktarına etkisi. Hayvansal Üretim, 48(1): 1-7.
  • Loor, J.J., Lin, X.B., Herbein, J.H. 2003. Effects of dietary cis-9, trans-11-18:2, trans-10, cis-12-18:2, or vaccenic acid (trans-11-18:1) during lactation on body composition, tissue fatty acid profiles, and litter growth in mice. Br. J. Nutr., 90: 1039-1048.
  • Macciota, N.P.P., Mele, M., Conte, G., Serra, A., Cassandro, M., Dal Zotto, R., Borlino, A.C., Pagnacco, G., Secchiari, P. 2008. Association between an polymorophism at the Stearoyl-CoA desaturase locus and milk production traits in Italian holsteins. Journan of Dairy Sciences, 91: 3184-3189.
  • Matsuhashi, T., Maruyama, S., Uemoto, Y., Kobayashi, N., Manen, H., Abe, T., Sakaguch, S., Kobayashi, E. 2011. Effects of bovine fatty acid synthase, Stearoyl coenzyme a desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty acid composition and carcass traits in Japanese black cattle. Journal of Animal Science, 89: 12-22.
  • Milanesi, E., Nicoloso, L., Crepaldi, P. 2007. Stearoyl CoA Desaturase (SCD) gene polymorphisms in Italian cattle breeds. sezione di zootecnica agraria, dipartimento di scienze animali, Universita Delgi Studi di Milano, Milamo, Italy.
  • Milanesi, E., Nicoloso, L., Crepaldi, P. 2008. Stearoyl CoA desaturase (SCD) gene polymorphisms in Italian cattle breeds. J. Anim. Breed. Genet. Feb;125(1):63-7.
  • Peterson, D.G., Kelsey, J.A., Bauman, D.E. 2002. Analisis of variation in cis-9, trans-11 conjugated linoleic acid (CLA) in milk fat of dairy cows. J. Dairy Sci., 85: 2164-2172.
  • Stockdale, C.R., Walker, G.P., Wales, W.J., Dalley, D.E., Bırkett, A., Shen, Z., Doyle, P.T. 2003. Influence of pasture and concentrates in the diet of grazing dairy cows on the fatty acid composition of milk. J. Dairy Res., 70: 267-276.
  • Tanuguchi, M., Utsugi, T., Oyama, K., Manen, H., Kobayashi, M., Tanabe, Y., Ogino, A. Tsuji, S. 2004. Genotype of Stearoly Coenzyme-A Desaturase is Associated with Fatty Acid Composition in Japanese Black Cattle. Mammalian Genome, 14: 142-150.
  • Yeh, F.C., Yang, R.C., Boyle, T.B.J., Mao, J.X. 1997. Theuser- Friendly Share Ware for Population Genetic Analysis. University of Alberta, Canada. (Http://Www.Ualberta.Ca/~Fhey/Pop32.Exe).

Hereford ırkı sığırlarda stearoyl-CoA desaturase (SCD) gen polimorfizmi

Year 2019, , 247 - 253, 18.06.2019
https://doi.org/10.29050/harranziraat.487490

Abstract

Bu çalışmada,
Hereford ırkı sığır populasyonunda Stearoyl CoA Desaturase (SCD) gen
polimorfizmi belirlenmiştir. SCD geni ekson V bölgesi gen dizi bilgilerine göre
A702G, T762C ve C878T tek nükleotid polimorfizmleri (SNP) tespit edilmiştir.
A702G bölgesinde AA, AG ve GG genotiplerinin frekansları sırasıyla; %20.69,
44.83 ve 34.45, T762C bölgesinde TT, TC ve CC genotiplerinin frekansları
sırasıyla; %13.79, 62.07 ve 24.14, C878T bölgesinde CC, CT ve TT genotiplerinin
frekansları sırasıyla; %44.83, 31.03 ve 24.14 olarak hesaplanmıştır. Bununla
beraber, A702G bölgesinde A ve G allel frekansları 0.431 ve 0.569, T762C
bölgesinde T ve C allel frekansları 0.448 ve 0.552, C878T bölgesinde C ve T
allel frekansları 0.603 ve 0.397'dir. Ayrıca ilgili SNP’ler bakımından
populasyonun Hardy-Weinberg dengesinde olmadığı belirlenmiştir (P>0.05).

References

  • Bölükbaşı, C., Erhan, M.K., Çelebi, Ş. 2005. The effects of dietary conjugated linoleic acid (CLA),sunflower oil and soybean oil on fatty acid composition of yolk and egg quality in laying hen. J. Food. Tech. 3(3): 427-429.
  • Chung, M., Ha, S., Jeong, S., Bok, J., Che, K., Baik, M., Choi, Y. 2000. Clonning and characterization of bovine Stearoyl CoA desaturase cDNA from adipose tissues. Bioscience, Biotechnology and Biochemistry, 64: 1526-1530.
  • Conte, G., Mele, M., Castiglinoni, B., Serra, A., Viva, M., Chessa, S., Pagnacco, G., Secchiari, P. 2006. Relationship between bovine SCD polymorphism locus and mammary gland desaturation activity. In: Procceedings of the 8th World congress on genetics applied to livestock prodiction. Belo Horizonte, Minas Gerais, Brazil,13-18 August, Pp. 22-37.
  • Elmas, H., Koncagül, S., Kiraz, S. 2015. Sığırlarda SCD (stearoyl-coa desaturase) geni. GAP VII. Tarım Kongresi Bildiri Kitabı, 28 Nisan -01 Mayıs. HRÜ. Şanlıurfa.
  • Kgwatalala, P.M., Ibeagha-Awemu, E.M., Mustafa, A.F., Zhao, X. 2009. Influence of Stearoyl coenzyme a desaturase 1 genotype and stage of lactation on fatty acid composition jersey cows. Journal of Dairy Sciences, 92: 1220-1228.
  • Köknaroğlu, H. 2007. Beslemenin sığır eti konjuge linoleik asit miktarına etkisi. Hayvansal Üretim, 48(1): 1-7.
  • Loor, J.J., Lin, X.B., Herbein, J.H. 2003. Effects of dietary cis-9, trans-11-18:2, trans-10, cis-12-18:2, or vaccenic acid (trans-11-18:1) during lactation on body composition, tissue fatty acid profiles, and litter growth in mice. Br. J. Nutr., 90: 1039-1048.
  • Macciota, N.P.P., Mele, M., Conte, G., Serra, A., Cassandro, M., Dal Zotto, R., Borlino, A.C., Pagnacco, G., Secchiari, P. 2008. Association between an polymorophism at the Stearoyl-CoA desaturase locus and milk production traits in Italian holsteins. Journan of Dairy Sciences, 91: 3184-3189.
  • Matsuhashi, T., Maruyama, S., Uemoto, Y., Kobayashi, N., Manen, H., Abe, T., Sakaguch, S., Kobayashi, E. 2011. Effects of bovine fatty acid synthase, Stearoyl coenzyme a desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty acid composition and carcass traits in Japanese black cattle. Journal of Animal Science, 89: 12-22.
  • Milanesi, E., Nicoloso, L., Crepaldi, P. 2007. Stearoyl CoA Desaturase (SCD) gene polymorphisms in Italian cattle breeds. sezione di zootecnica agraria, dipartimento di scienze animali, Universita Delgi Studi di Milano, Milamo, Italy.
  • Milanesi, E., Nicoloso, L., Crepaldi, P. 2008. Stearoyl CoA desaturase (SCD) gene polymorphisms in Italian cattle breeds. J. Anim. Breed. Genet. Feb;125(1):63-7.
  • Peterson, D.G., Kelsey, J.A., Bauman, D.E. 2002. Analisis of variation in cis-9, trans-11 conjugated linoleic acid (CLA) in milk fat of dairy cows. J. Dairy Sci., 85: 2164-2172.
  • Stockdale, C.R., Walker, G.P., Wales, W.J., Dalley, D.E., Bırkett, A., Shen, Z., Doyle, P.T. 2003. Influence of pasture and concentrates in the diet of grazing dairy cows on the fatty acid composition of milk. J. Dairy Res., 70: 267-276.
  • Tanuguchi, M., Utsugi, T., Oyama, K., Manen, H., Kobayashi, M., Tanabe, Y., Ogino, A. Tsuji, S. 2004. Genotype of Stearoly Coenzyme-A Desaturase is Associated with Fatty Acid Composition in Japanese Black Cattle. Mammalian Genome, 14: 142-150.
  • Yeh, F.C., Yang, R.C., Boyle, T.B.J., Mao, J.X. 1997. Theuser- Friendly Share Ware for Population Genetic Analysis. University of Alberta, Canada. (Http://Www.Ualberta.Ca/~Fhey/Pop32.Exe).
There are 15 citations in total.

Details

Primary Language Turkish
Subjects Agricultural Engineering
Journal Section Araştırma Makaleleri
Authors

Hazniye Nergis This is me 0000-0002-3631-6117

Seyrani Koncagül 0000-0001-7596-0485

Selahaddin Kiraz 0000-0003-1298-4783

Publication Date June 18, 2019
Submission Date November 27, 2018
Published in Issue Year 2019

Cite

APA Nergis, H., Koncagül, S., & Kiraz, S. (2019). Hereford ırkı sığırlarda stearoyl-CoA desaturase (SCD) gen polimorfizmi. Harran Tarım Ve Gıda Bilimleri Dergisi, 23(2), 247-253. https://doi.org/10.29050/harranziraat.487490

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