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Sığırlarda Genomik Seleksiyon

Year 2021, Volume: 4 Issue: 1, 60 - 67, 15.12.2021

Erkan Say , Enver Altun

Abstract

Bu derlemenin amacı, sığırlarda genomik seleksiyonun tarihsel gelişimini ve önemini ortaya koymaktır. İnsanlar yüzyıllardır daha fazla verim elde etmeye çalışmaktadırlar. Bu amaçla hayvancılık endüstrisi geçtiğimiz yüzyılda yüksek genetik kapasiteye sahip inek ve boğaların yetiştirilmesi için birçok yeni biyoteknolojik yöntemden yararlanmıştır. Genomik seleksiyon, bu biyoteknolojik yöntemlerden biridir (belki de en önemlisi). Bu derlemede, genomik seleksiyon ve genomiği değerlendirmeye yönelik terimler tanıtılmaktadır

Keywords

Genomik Seleksiyon GYD Sığır SNP

References

  • Calus, M. P. L., Meuwissen, T. H. E., De Roos, A. P. W., & Veerkamp, R. F. (2008). Accuracy of genomic selection using different methods to define haplotypes. Genetics. https://doi.org/10.1534/genetics.107.080838
  • Calus, M. P. L., & Veerkamp, R. F. (2007). Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. Journal of Animal Breeding and Genetics. https://doi.org/10.1111/j.1439-0388.2007.00691.x
  • García-Ruiz, A., Cole, J. B., VanRaden, P. M., Wiggans, G. R., Ruiz-López, F. J., & Van Tassell, C. P. (2016). Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection. Proceedings of the National Academy of Sciences, 113(28), E3995–E4004. https://doi.org/10.1073/pnas.1519061113
  • Gonzlez-Recio, O., Gianola, D., Rosa, G. J., Weigel, K. A., & Kranis, A. (2009). Genome-assisted prediction of a quantitative trait measured in parents and progeny: Application to food conversion rate in chickens. Genetics Selection Evolution. https://doi.org/10.1186/1297-9686-41-3
  • Habier D., Fernando R.L. , & Dekkers J.C.M.. (2007). The impact of genetic relationship information on genome-assisted breeding values. Genetics, 177(4), 2389–2397
  • Harris, B. L., & Johnson, D. L. (2010). Genomic predictions for New Zealand dairy bulls and integration with national genetic evaluation. Journal of Dairy Science. https://doi.org/10.3168/jds.2009-2619
  • Hayes, B.J., Bowman, P. J., Chamberlain, A. J., & Goddard, M. E. (2009). Invited review: Genomic selection in dairy cattle: Progress and challenges. Journal of Dairy Science, 92(2), 433–443. https://doi.org/10.3168/jds.2008-1646
  • Hayes, Ben J., Lewin, H. A., & Goddard, M. E. (2013). The future of livestock breeding: Genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends in Genetics, 29(4), 206–214. https://doi.org/10.1016/j.tig.2012.11.009
  • Humblot, P., Le Bourhis, D., Fritz, S., Colleau, J. J., Gonzalez, C., Guyader Joly, C., … Ponsart, C. (2010). Reproductive Technologies and Genomic Selection in Cattle. Veterinary Medicine International, 2010, 1–8. https://doi.org/10.4061/2010/192787
  • Inanç, M. E., & Daşkın, A. (2015). Sığırlarda Suni Tohumlama Uygulamaları Yönünden Genomik Seleksiyonun Önemi. Atatürk Üniversitesi Veteriner Bilimleri Dergisi, 10(2), 139–145. https://doi.org/10.17094/avbd.98368
  • Kolbehdari, D., Schaeffer, L. R., & Robinson, J. A. B. (2007). Estimation of genome-wide haplotype effects in half-sib designs. Journal of Animal Breeding and Genetics. https://doi.org/10.1111/j.1439-0388.2007.00698.x
  • Koning, D.-J. (2016). Meuwissen et al. on Genomic Selection. 203(May), 5–7. https://doi.org/10.1534/genetics.116.189795
  • Lee, S. H., Van Der Werf, J. H. J., Hayes, B. J., Goddard, M. E., & Visscher, P. M. (2008). Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1000231
  • Legarra, A., Robert-Granié, C., Manfredi, E., & Elsen, J. M. (2008). Performance of genomic selection in mice. Genetics. https://doi.org/10.1534/genetics.108.088575
  • Luan, T., Woolliams, J. A., Lien, S., Kent, M., Svendsen, M., & Meuwissen, T. H. E. (2009). The Accuracy of Genomic Selection in Norwegian Red Cattle Assessed by Cross-Validation. 1126(November), 1119–1126. https://doi.org/10.1534/genetics.109.10739
  • Meuwissen, T. H. E., Hayes, B. J., & Goddard, M. E. (2001). Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps.
  • Özkan, H., & Yakan, A. (2017). Hayvan Yetiştiriciliğinde Genomik Seleksiyon: Dünü, Bugünü Genomic Selection in Animal Breeding: Past, Present. Lalahan Hay. Araşt. Enst. Derg, 57(2), 112–117. Retrieved from http://dergi.hmae.gov.tr/Dokuman/TR/12122017100742AM.pdf
  • Parker Gaddis, K. L., Cole, J. B., Clay, J. S., & Maltecca, C. (2014). Genomic selection for producer-recorded health event data in US dairy cattle. Journal of Dairy Science, 97(5), 3190–3199. https://doi.org/10.3168/jds.2013-7543
  • Rolf, M. M., Taylor, J. F., Schnabel, R. D., McKay, S. D., McClure, M. C., Northcutt, S. L., … Weaber, R. L. (2010). Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. BMC Genetics, 11. https://doi.org/10.1186/1471-2156-11-24
  • Schefers, J. M., & Weigel, K. A. (2012). Genomic selection in dairy cattle : Integration of DNA testing into breeding programs. 4–9. https://doi.org/10.2527/af.2011-0032
  • Seno, L. D. O., Gomes, D., Guidolin, F., Aspilcueta-borquis, R. R., Batista, G., Bruno, T., … Munari, D. P. (2018). Genomic selection in dairy cattle simulated populations. (May). https://doi.org/10.1017/S0022029918000304
  • Shengqiang, Z., Dekkers, J. C. M., Fernando, R. L., & Jannink, J. L. (2009). Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: A barley case study. Genetics. https://doi.org/10.1534/genetics.108.098277
  • Solberg, T. R., Sonesson, A. K., Woolliams, J. A., & Meuwissen, T. H. E. (2008). Genomic selection using different marker types and densities. Journal of Animal Science. https://doi.org/10.2527/jas.2007-0010
  • Su, G., Madsen, P., Nielsen, U. S., Mäntysaari, E. A., Aamand, G. P., Christensen, O. F., & Lund, M. S. (2012). Genomic prediction for Nordic Red Cattle using one-step and selection index blending. Journal of Dairy Science, 95(2), 909–917. https://doi.org/10.3168/jds.2011-4804
  • VanRaden, P. M., Van Tassell, C. P., Wiggans, G. R., Sonstegard, T. S., Schnabel, R. D., Taylor, J. F., & Schenkel, F. S. (2009). Invited review: reliability of genomic predictions for North American Holstein bulls. Journal of Dairy Science. https://doi.org/10.3168/jds.2008-1514
  • Verbyla, K. L., Hayes, B. J., Bowman, P. J., & Goddard, M. E. (2009). Accuracy of genomic selection using stochastic search variable selection in Australian holstein friesian dairy cattle. Genetics Research, 91(5), 307–311. https://doi.org/10.1017/S0016672309990243

Year 2021, Volume: 4 Issue: 1, 60 - 67, 15.12.2021

Erkan Say , Enver Altun

Abstract

References

  • Calus, M. P. L., Meuwissen, T. H. E., De Roos, A. P. W., & Veerkamp, R. F. (2008). Accuracy of genomic selection using different methods to define haplotypes. Genetics. https://doi.org/10.1534/genetics.107.080838
  • Calus, M. P. L., & Veerkamp, R. F. (2007). Accuracy of breeding values when using and ignoring the polygenic effect in genomic breeding value estimation with a marker density of one SNP per cM. Journal of Animal Breeding and Genetics. https://doi.org/10.1111/j.1439-0388.2007.00691.x
  • García-Ruiz, A., Cole, J. B., VanRaden, P. M., Wiggans, G. R., Ruiz-López, F. J., & Van Tassell, C. P. (2016). Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection. Proceedings of the National Academy of Sciences, 113(28), E3995–E4004. https://doi.org/10.1073/pnas.1519061113
  • Gonzlez-Recio, O., Gianola, D., Rosa, G. J., Weigel, K. A., & Kranis, A. (2009). Genome-assisted prediction of a quantitative trait measured in parents and progeny: Application to food conversion rate in chickens. Genetics Selection Evolution. https://doi.org/10.1186/1297-9686-41-3
  • Habier D., Fernando R.L. , & Dekkers J.C.M.. (2007). The impact of genetic relationship information on genome-assisted breeding values. Genetics, 177(4), 2389–2397
  • Harris, B. L., & Johnson, D. L. (2010). Genomic predictions for New Zealand dairy bulls and integration with national genetic evaluation. Journal of Dairy Science. https://doi.org/10.3168/jds.2009-2619
  • Hayes, B.J., Bowman, P. J., Chamberlain, A. J., & Goddard, M. E. (2009). Invited review: Genomic selection in dairy cattle: Progress and challenges. Journal of Dairy Science, 92(2), 433–443. https://doi.org/10.3168/jds.2008-1646
  • Hayes, Ben J., Lewin, H. A., & Goddard, M. E. (2013). The future of livestock breeding: Genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends in Genetics, 29(4), 206–214. https://doi.org/10.1016/j.tig.2012.11.009
  • Humblot, P., Le Bourhis, D., Fritz, S., Colleau, J. J., Gonzalez, C., Guyader Joly, C., … Ponsart, C. (2010). Reproductive Technologies and Genomic Selection in Cattle. Veterinary Medicine International, 2010, 1–8. https://doi.org/10.4061/2010/192787
  • Inanç, M. E., & Daşkın, A. (2015). Sığırlarda Suni Tohumlama Uygulamaları Yönünden Genomik Seleksiyonun Önemi. Atatürk Üniversitesi Veteriner Bilimleri Dergisi, 10(2), 139–145. https://doi.org/10.17094/avbd.98368
  • Kolbehdari, D., Schaeffer, L. R., & Robinson, J. A. B. (2007). Estimation of genome-wide haplotype effects in half-sib designs. Journal of Animal Breeding and Genetics. https://doi.org/10.1111/j.1439-0388.2007.00698.x
  • Koning, D.-J. (2016). Meuwissen et al. on Genomic Selection. 203(May), 5–7. https://doi.org/10.1534/genetics.116.189795
  • Lee, S. H., Van Der Werf, J. H. J., Hayes, B. J., Goddard, M. E., & Visscher, P. M. (2008). Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1000231
  • Legarra, A., Robert-Granié, C., Manfredi, E., & Elsen, J. M. (2008). Performance of genomic selection in mice. Genetics. https://doi.org/10.1534/genetics.108.088575
  • Luan, T., Woolliams, J. A., Lien, S., Kent, M., Svendsen, M., & Meuwissen, T. H. E. (2009). The Accuracy of Genomic Selection in Norwegian Red Cattle Assessed by Cross-Validation. 1126(November), 1119–1126. https://doi.org/10.1534/genetics.109.10739
  • Meuwissen, T. H. E., Hayes, B. J., & Goddard, M. E. (2001). Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps.
  • Özkan, H., & Yakan, A. (2017). Hayvan Yetiştiriciliğinde Genomik Seleksiyon: Dünü, Bugünü Genomic Selection in Animal Breeding: Past, Present. Lalahan Hay. Araşt. Enst. Derg, 57(2), 112–117. Retrieved from http://dergi.hmae.gov.tr/Dokuman/TR/12122017100742AM.pdf
  • Parker Gaddis, K. L., Cole, J. B., Clay, J. S., & Maltecca, C. (2014). Genomic selection for producer-recorded health event data in US dairy cattle. Journal of Dairy Science, 97(5), 3190–3199. https://doi.org/10.3168/jds.2013-7543
  • Rolf, M. M., Taylor, J. F., Schnabel, R. D., McKay, S. D., McClure, M. C., Northcutt, S. L., … Weaber, R. L. (2010). Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle. BMC Genetics, 11. https://doi.org/10.1186/1471-2156-11-24
  • Schefers, J. M., & Weigel, K. A. (2012). Genomic selection in dairy cattle : Integration of DNA testing into breeding programs. 4–9. https://doi.org/10.2527/af.2011-0032
  • Seno, L. D. O., Gomes, D., Guidolin, F., Aspilcueta-borquis, R. R., Batista, G., Bruno, T., … Munari, D. P. (2018). Genomic selection in dairy cattle simulated populations. (May). https://doi.org/10.1017/S0022029918000304
  • Shengqiang, Z., Dekkers, J. C. M., Fernando, R. L., & Jannink, J. L. (2009). Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: A barley case study. Genetics. https://doi.org/10.1534/genetics.108.098277
  • Solberg, T. R., Sonesson, A. K., Woolliams, J. A., & Meuwissen, T. H. E. (2008). Genomic selection using different marker types and densities. Journal of Animal Science. https://doi.org/10.2527/jas.2007-0010
  • Su, G., Madsen, P., Nielsen, U. S., Mäntysaari, E. A., Aamand, G. P., Christensen, O. F., & Lund, M. S. (2012). Genomic prediction for Nordic Red Cattle using one-step and selection index blending. Journal of Dairy Science, 95(2), 909–917. https://doi.org/10.3168/jds.2011-4804
  • VanRaden, P. M., Van Tassell, C. P., Wiggans, G. R., Sonstegard, T. S., Schnabel, R. D., Taylor, J. F., & Schenkel, F. S. (2009). Invited review: reliability of genomic predictions for North American Holstein bulls. Journal of Dairy Science. https://doi.org/10.3168/jds.2008-1514
  • Verbyla, K. L., Hayes, B. J., Bowman, P. J., & Goddard, M. E. (2009). Accuracy of genomic selection using stochastic search variable selection in Australian holstein friesian dairy cattle. Genetics Research, 91(5), 307–311. https://doi.org/10.1017/S0016672309990243
There are 26 citations in total.

Details

Primary Language Turkish
Subjects Veterinary Surgery
Journal Section Derlemeler (Review Articles)
Authors

Erkan Say 0000-0003-0131-5912

Enver Altun 0000-0003-3261-312X

Publication Date December 15, 2021
Submission Date May 20, 2021
Acceptance Date December 11, 2021
Published in Issue Year 2021 Volume: 4 Issue: 1

Cite

APA Say, E., & Altun, E. (2021). Sığırlarda Genomik Seleksiyon. International Journal of Eastern Mediterranean Agricultural Research, 4(1), 60-67.
AMA Say E, Altun E. Sığırlarda Genomik Seleksiyon. IJEMAR. December 2021;4(1):60-67.
Chicago Say, Erkan, and Enver Altun. “Sığırlarda Genomik Seleksiyon”. International Journal of Eastern Mediterranean Agricultural Research 4, no. 1 (December 2021): 60-67.
EndNote Say E, Altun E (December 1, 2021) Sığırlarda Genomik Seleksiyon. International Journal of Eastern Mediterranean Agricultural Research 4 1 60–67.
IEEE E. Say and E. Altun, “Sığırlarda Genomik Seleksiyon”, IJEMAR, vol. 4, no. 1, pp. 60–67, 2021.
ISNAD Say, Erkan - Altun, Enver. “Sığırlarda Genomik Seleksiyon”. International Journal of Eastern Mediterranean Agricultural Research 4/1 (December 2021), 60-67.
JAMA Say E, Altun E. Sığırlarda Genomik Seleksiyon. IJEMAR. 2021;4:60–67.
MLA Say, Erkan and Enver Altun. “Sığırlarda Genomik Seleksiyon”. International Journal of Eastern Mediterranean Agricultural Research, vol. 4, no. 1, 2021, pp. 60-67.
Vancouver Say E, Altun E. Sığırlarda Genomik Seleksiyon. IJEMAR. 2021;4(1):60-7.
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