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Single name nomenclature of fungi and its some reflections since 2011 especially in Turkey

Year 2019, Volume: 10 Issue: 3, 50 - 59, 26.12.2019

Abstract

Despite some opposing mycologists in the fungal systematics, dual
nomenclature (meaning that a perfect i.e.
sexually reproducing fungal species different name, the same species as an
imperfect i.e. that fungus has asexual reproduction different name given
)
was quitted along with publishing “The Amsterdam Declaration on Fungal
Nomenclature”. Developments related to the subject since 2011 and the effects
of the single fungal taxonomic system are discussed. Full implementation of the
single name nomenclature system may take a long time. It is difficult to
abandon the fungal names in the publications before 2013, and these sources are
still used in all over the world. Change can take place over time. It is seen
that the old name of some species whose name is changed is still used in many
publications.



 

References

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  • Blackwell, M. (2011). The Fungi: 1, 2, 3 ... 5.1 million species? Amer J Bot 98: 426-438.
  • Crous, P.W., Giraldo, A., Hawksworth, D.L., Robert, V., Kirk, P.M., Guarro, J., Robbertse, B., Schoch, C.L., Damm, U., Trakunyingcharoen, T. & Groenewald, J.Z. (2014). The Genera of Fungi: fixing the application of type species of generic names. Ima Fungus 5: 141-160.
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  • Gams, W. (2013). A new nomenclature for fungi. Mycol. Iranica 1: 7-13, 2013.
  • Garza, J.R.C., Miranda, R.S.C., Garza, A.M.C., Texis, A.P.E., Díaz, E.G. & Juárez, U.S. (2018). Peritonitis due to Geotrichum candidum in continuous ambulatory peritoneal dialysis. Case Rep In Clin Med 7: 232-240.
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  • Hawksworth, D.L. (2011). A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. MycoKeys 1: 7-20.
  • Hawksworth, D.L. (2015). Naming fungi involved in spoilage of food, drink, and water. Current Opinion Food Sci 5: 23-28.
  • Hibbett, D.S. and Taylor, J.W. (2013). Fungal systematics: is a new age of enlightenment at hand? Nature Rev 11: 129-133.
  • Hong, S.B., Kwon, S.B., Kim, W.G. (2012). Introductions of the new code of fungal nomenclature and recent trends in transition into One Fungus/One Name System. The Korean J Mycol 40: 73-77.
  • Hoog, G.S.D. (2013). A bird’s eye view of the fungal Kingdom – the quest for nomenclatural stability. Mycoses. 56 (Suppl.: 3, Special Issue): 11-11. 6th Trends In Medical Mycology; Workshops. October 11-14, 2013, Copenhag-Denmark. Link: <http://onlinelibrary.wiley.com/doi/10.1111/myc.12122_1/pdf> (Access: Oct. 28, 2018.).
  • de Hoog, G.S., Dukik, K., Monod, M., Packeu, A., Stubbe, D., Hendrickx, M., Kupsch, C., Stielow, J.B., Freeke, J., Göker, M., Rezaei-Matehkolaei, A., Mirhendi, H., Gräser, Y. (2017). Toward a novel multilocus phylogenetic taxonomy for the dermatophytes. Mycopathol 182: 5-31.
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  • ISO 13125:2013(E): Fine ceramics (advanced ceramics, advanced technical ceramics) -- Test method for antifungal activity of semiconducting photocatalytic materials.
  • ISO 846:1997(E): Plastics - Evaluation of the action of microorganisms.
  • JIS A 5756:2006 Building gaskets and Building structural gaskets -Materials in prefprmed solid vulcanizates used for sealing glazing and panels.
  • JIS L 1921:2015 Textiles - Determination of antifungal activity and efficacy of textile products.
  • Kepler, R., Ban, S., Nakagiri, A., Bischoff, J., Hywel-Jones, N., Owensby, C.A., Spatafora, J.W. (2013). The phylogenetic placement of hypocrealean insect pathogens in the genus Polycephalomyces: An application of One Fungus One Name. Fungal Biol 17: 611-622.
  • Kirk, P.M., Stalpers, J.A., Braun, U., Crous, P.W., Hansen, K., Hawksworth, D.L., Hyde, K.D., Lücking, R., Lumbsch, T.H., Rossman, A.Y., Seifert, K.A., Stadler, M. (2013). A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi, and plants. Ima Fungus 4: 381-443.
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  • Levetin, E., Horner, W.E., Scott, J.A. (2016). Taxonomy of allergenic fungi. Journal of Allergy Clin Allergy Prac 4: 375-385.
  • MIL-STD-810G, 2014, Department of Defense Test Method Standard, Environmental Engineering Considerations and Laboratory Tests.
  • Norvell, L.L. (2011). Fungal Nomenclature. 1. Melbourne approves a new CODE. Mycotaxon 116: 481-490. Pitt, J.I., Taylor, J.W. (2014). Aspergillus, its sexual states and the new International Code of Nomenclature. Mycologia 106: 1051-1062.
  • Prakash, P.Y., Irinyi, L., Halliday, C., Chen, S., Robert, V., Meyer, W. (2017). Online databases for taxonomy and identification of pathogenic fungi and proposal for a cloud-based dynamic data network platform. J Clin Microbiol 55: 1011-1024.
  • Samson, R.A., Yilmaz, N., Houbraken, J., Spierenburg, H., Seifert, K.A., Peterson, S.W., Varga, J., Frisvad, J.C. (2011). Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Studies in Mycol 70: 159-183.
  • Samson, R.A. (2013). One fungus one name. Mycoses. 56 (Suppl.: 3, Special Issue): 30-30. 6th Trends In Medical Mycology; Workshops. Oct. 11-14, 2013, Copenhag-Denmark. Link: http://onlinelibrary.wiley.com/doi/10.1111/myc.12122_4/pdf
  • Sesli, E., Vizzini, A. (2017). Two new Rhodocybe species (sect. Rufobrunnea, Entolomataceae) from the East Black Sea coast of Turkey. Turk J Bot 41: 200-210.
  • Tóth, L., Váradi, G., Borics, A., Batta, G., Kele, Z., Vendrinszky, A., Tóth, R., Ficze, H., Tóth, G.K., Vágvölgyi, C., Marx, F., Galgóczy, L. (2018). Anti-candidal activity and functional mapping of recombinant and synthetic Neosartorya fischeri Antifungal Protein 2 (NFAP2). Frontiers in Microbiol 9: Article number: 393.
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Fungusların tek isimle isimlendirilmesi ve 2011’den bu yana özellikle Türkiye’deki yansımaları

Year 2019, Volume: 10 Issue: 3, 50 - 59, 26.12.2019

Abstract

Mantar sistematiğindeki bazı muhalif mikologlara rağmen, çift
isimlendirme (yani; eşeyli üreme gösteren fungus türlerinin farklı, eşeysiz üreyen
aynı fungusun farklı tür adı alması) uzun zaman önce “Amsterdam Deklarasyonu -
Fungal İsimlendirme” makalesi ile yayınlanmıştır. 2011'den bu yana konuyla
ilgili gelişmeler ve tek fungal taksonomik sistemin etkileri tartışılmaktadır.
Tek isim isimlendirme sisteminin tam olarak uygulanması uzun zaman alabilir.
2013'ten önce yayınlardaki mantar isimlerini terk etmek zor olmakla birlikte bu
kaynaklar hala tüm dünyada kullanılıyor. Değişim zamanla
gerçekleştirilebilecektir. Adı değiştirilmiş bazı türlerin eski isimlerinin
hala birçok yayında kullanıldığı görülmektedir.

References

  • Ainsworth, G. C. (2009). Introduction to the History of Mycology. 359 pp. Cambridge University Press. Cambridge-UK. First publ: 1976; digital ed. version.
  • Aylward, J. (2014). Diversity and dispersal of the ophiostomatoid fungus, Knoxdaviesia proteae, within Protea repens infructescences. YL Tezi-MSc Thesis. 95 pp. Stellenbosch University http://scholar.sun.ac.za. Link: <http://scholar.sun.ac.za/handle/10019.1/86324>. (Access: April 21, 2014). lackwel, l. M. and Spatafora J.W. (2004). Fungi and their allies. pp 7-21. Eds.: Mueller GM, Bills GF, Foster MS. Biodiversity of Fungi: Inventory and Monitoring Methods. 777 pp. Elsevier Academic Press. Amsterdam.
  • Blackwell, M. (2011). The Fungi: 1, 2, 3 ... 5.1 million species? Amer J Bot 98: 426-438.
  • Crous, P.W., Giraldo, A., Hawksworth, D.L., Robert, V., Kirk, P.M., Guarro, J., Robbertse, B., Schoch, C.L., Damm, U., Trakunyingcharoen, T. & Groenewald, J.Z. (2014). The Genera of Fungi: fixing the application of type species of generic names. Ima Fungus 5: 141-160.
  • Demirel, R. (2016). Comparison of rDNA regions ITS LSU and SSU of some Aspergillus, Penicillium and Talaromyces spp. Turk J Bot 40: 576-583.
  • Gams, W., Jaklitsch, W. (and signatured by 77 researchers). (2011). Fungal nomenclature 3. A critical response to the “Amsterdam Declaration”. Mycotaxon 116: 501-512.
  • Gams, W. (2013). A new nomenclature for fungi. Mycol. Iranica 1: 7-13, 2013.
  • Garza, J.R.C., Miranda, R.S.C., Garza, A.M.C., Texis, A.P.E., Díaz, E.G. & Juárez, U.S. (2018). Peritonitis due to Geotrichum candidum in continuous ambulatory peritoneal dialysis. Case Rep In Clin Med 7: 232-240.
  • Geiser, D.M., Aoki, T., Bacon, C.W., Baker, S.E., Bhattacharyya, M.K., Brandt, M.E., Brown, D.W., Burgess, L.W., Chulze, S., Coleman, J.J., Correll, J.C., Covert, S.F., Crous, P.W., Cuomo, C.A., De Hoog, G.S., Di Pietro, A., Elmer, W.H., Epstein, L., Frandsen, R.J., Freeman, S., Gagkaeva, T., Glenn, A.E., Gordon, T.R., Gregory, N.F., Hammond-Kosack, K.E., Hanson, L.E., Jímenez-Gasco Mdel, M., Kang, S., Kistler, H.C., Kuldau, G.A., Leslie, J.F., Logrieco, A., Lu, G., Lysøe, E., Ma, L.J., McCormick, S.P., Migheli, Q., Moretti, A., Munaut, F., O'Donnell, K., Pfenning, L., Ploetz, R.C., Proctor, R.H., Rehner, S.A., Robert, V.A., Rooney, A.P., Bin Salleh, B., Scandiani, M.M., Scauflaire, J., Short, D.P., Steenkamp, E., Suga, H., Summerell, B.A., Sutton, D.A., Thrane, U., Trail, F., Van Diepeningen, A., Vanetten, H.D., Viljoen, A., Waalwijk, C., Ward, T.J., Wingfield, M.J., Xu, J.R., Yang, X.B., Yli-Mattila, T., Zhang, N. (2013). One Fungus, One Name: Defining the genus Fusarium in a scientifically robust way that preserves longstanding use Phytopathol 103: 400-408.
  • Hawksworth, D.L., Crous, P.W., Redhead, S.A., Reynolds, D.R., Samson, R.A., Seifert, K.A., Taylor, J.W., Wingfield, M.J., Abaci, O., Aime, C., Asan, A., Bai, F.Y., de Beer, Z.W., Begerow, D., Berikten, D., Boekhout, T., Buchanan, P.K., Burgess, T., Buzina, W., Cai, L., Cannon, P.F., Crane, J.L., Damm, U., Daniel, H.M., van Diepeningen, A.D., Druzhinina, I., Dyer, P.S., Ursula Eberhardt, Jack, W. Fell, Frisvad, J.C., Geiser, D.M., Geml, J., Glienke, C., Gräfenhan, T., Z. Groenewald, J.Z., Groenewald M, de Gruyter, J., Guého-Kellermann, E., Guo, L.D., Hibbett, D.S., Hong, S.B., Hoog, G.S.D., Houbraken, J., Huhndorf, S.M., Hyde, K.D., Ismail, A., Johnston, P.R., Kadaifciler, D.G., Kirk, P.M., Kõljalg, U., Kurtzman, C.P., Lagneau, P.E., Lévesque, C.A., Liu, X., Lombard, L., Meyer, W., Miller, A., Minter, D.W., Najafzadeh, M.J., Norvell, L., Ozerskaya, S.M., Ozic, R., Pennycook, S.R., Peterson, S.W., Pettersson, O.V., Quaedvlieg, W., Robert, V.A., Ruibal, C., Schnürer, J., Schroers, H.J., Shivas, R., Slippers, B., Spierenburg, H., Takashima, M., Taskin, E., Thines, M., Thrane, U., Uztan, A.H., Raak, M.V., Varga, J., Vasco, A., Verkley, G., Videira, S.I.R., de Vries, R.P., Weir, B.S., Yilmaz, N., Yurkov, A., Zhang, N. (2011). The Amsterdam Declaration on fungal nomenclature. Ima Fungus 2: 105-112.
  • Hawksworth, D.L. (2011). A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names. MycoKeys 1: 7-20.
  • Hawksworth, D.L. (2015). Naming fungi involved in spoilage of food, drink, and water. Current Opinion Food Sci 5: 23-28.
  • Hibbett, D.S. and Taylor, J.W. (2013). Fungal systematics: is a new age of enlightenment at hand? Nature Rev 11: 129-133.
  • Hong, S.B., Kwon, S.B., Kim, W.G. (2012). Introductions of the new code of fungal nomenclature and recent trends in transition into One Fungus/One Name System. The Korean J Mycol 40: 73-77.
  • Hoog, G.S.D. (2013). A bird’s eye view of the fungal Kingdom – the quest for nomenclatural stability. Mycoses. 56 (Suppl.: 3, Special Issue): 11-11. 6th Trends In Medical Mycology; Workshops. October 11-14, 2013, Copenhag-Denmark. Link: <http://onlinelibrary.wiley.com/doi/10.1111/myc.12122_1/pdf> (Access: Oct. 28, 2018.).
  • de Hoog, G.S., Dukik, K., Monod, M., Packeu, A., Stubbe, D., Hendrickx, M., Kupsch, C., Stielow, J.B., Freeke, J., Göker, M., Rezaei-Matehkolaei, A., Mirhendi, H., Gräser, Y. (2017). Toward a novel multilocus phylogenetic taxonomy for the dermatophytes. Mycopathol 182: 5-31.
  • ISO 13125:2013(E): Fine ceramics (advanced ceramics, advanced technical ceramics) - Test method for antifungal activity of semiconducting photocatalytic materials.
  • ISO 13125:2013(E): Fine ceramics (advanced ceramics, advanced technical ceramics) -- Test method for antifungal activity of semiconducting photocatalytic materials.
  • ISO 846:1997(E): Plastics - Evaluation of the action of microorganisms.
  • JIS A 5756:2006 Building gaskets and Building structural gaskets -Materials in prefprmed solid vulcanizates used for sealing glazing and panels.
  • JIS L 1921:2015 Textiles - Determination of antifungal activity and efficacy of textile products.
  • Kepler, R., Ban, S., Nakagiri, A., Bischoff, J., Hywel-Jones, N., Owensby, C.A., Spatafora, J.W. (2013). The phylogenetic placement of hypocrealean insect pathogens in the genus Polycephalomyces: An application of One Fungus One Name. Fungal Biol 17: 611-622.
  • Kirk, P.M., Stalpers, J.A., Braun, U., Crous, P.W., Hansen, K., Hawksworth, D.L., Hyde, K.D., Lücking, R., Lumbsch, T.H., Rossman, A.Y., Seifert, K.A., Stadler, M. (2013). A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi, and plants. Ima Fungus 4: 381-443.
  • Kocsubé, S., Perrone, G., Magistà, D., Houbraken, J., Varga, J., Szigeti, G., Hubka, V., Hong, S.B., Frisvad, J.C., Samson, R.A. (2016). Aspergillus is monophyletic: evidence from multiple gene phylogenies and extrolites profiles. Studies in Mycol 85: 193-213.
  • Levetin, E., Horner, W.E., Scott, J.A. (2016). Taxonomy of allergenic fungi. Journal of Allergy Clin Allergy Prac 4: 375-385.
  • MIL-STD-810G, 2014, Department of Defense Test Method Standard, Environmental Engineering Considerations and Laboratory Tests.
  • Norvell, L.L. (2011). Fungal Nomenclature. 1. Melbourne approves a new CODE. Mycotaxon 116: 481-490. Pitt, J.I., Taylor, J.W. (2014). Aspergillus, its sexual states and the new International Code of Nomenclature. Mycologia 106: 1051-1062.
  • Prakash, P.Y., Irinyi, L., Halliday, C., Chen, S., Robert, V., Meyer, W. (2017). Online databases for taxonomy and identification of pathogenic fungi and proposal for a cloud-based dynamic data network platform. J Clin Microbiol 55: 1011-1024.
  • Samson, R.A., Yilmaz, N., Houbraken, J., Spierenburg, H., Seifert, K.A., Peterson, S.W., Varga, J., Frisvad, J.C. (2011). Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Studies in Mycol 70: 159-183.
  • Samson, R.A. (2013). One fungus one name. Mycoses. 56 (Suppl.: 3, Special Issue): 30-30. 6th Trends In Medical Mycology; Workshops. Oct. 11-14, 2013, Copenhag-Denmark. Link: http://onlinelibrary.wiley.com/doi/10.1111/myc.12122_4/pdf
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There are 42 citations in total.

Details

Primary Language English
Journal Section 2nd International Eurasian Mycology Congress (EMC’ 19)
Authors

Ahmet Asan 0000-0002-4132-3848

Gülay Giray 0000-0002-8703-6465

Rasime Demirel 0000-0001-6702-489X

Halide Aydoğdu 0000-0002-1778-2200

Publication Date December 26, 2019
Published in Issue Year 2019 Volume: 10 Issue: 3

Cite

APA Asan, A., Giray, G., Demirel, R., Aydoğdu, H. (2019). Single name nomenclature of fungi and its some reflections since 2011 especially in Turkey. Mantar Dergisi, 10(3), 50-59. https://doi.org/10.30708/mantar.653329

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