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The microbiota of humans and animals and its relationship with the use of functional foods

Year 2022, Volume: 1 Issue: 2, 32 - 41, 31.12.2022

Abstract

In human and animal body, especially in the gastrointestinal tract, there are many microorganisms that coexist in a mutually beneficial relationship with the host. The main function of the intestinal microbiome is to ferment indigestible substrates and short-chain fatty acids, etc. to inhibit the proliferation of pathogens, among other functions. For example, by increasing beneficial microorganisms that produce important antimicrobial metabolites. The gut microbiota can prevent the colonization of pathogens through the mechanism of colonization resistance. Antibiotic exposure to the gut microbiome can trigger the response that affects colonization resistance. This review provides an overview of the gut microbiome and the effects of antibiotic therapy on pathogen and disease colonization, the relationship between diet and microbiota, and the use of functional foods.

References

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Year 2022, Volume: 1 Issue: 2, 32 - 41, 31.12.2022

Abstract

References

  • Alessandri, G., Milani, C., Mancabelli, L., Mangifesta, M., Lugli, G.A., Vi¬appiani, A., Duranti, S., Turroni, F., Ossiprandi, M.C., van, Sinderen, D., & Ventura, M. (2019). Metagenomic dissection of the cani¬ne gut microbiota: insights into taxonomic, metabolic and nutritional features. Environmental Microbiology, 21, 1331-1343. https://doi.org/10.1111/1462-2920.14540
  • AlShawaqfeh, M.K., Wajid, B., Minamoto, Y., Markel, M., Lidbury, J.A., Steiner, J.M., Serpedin, E., & Suchodolski, J.S. (2017). A dysbiosis index to assess microbial changes in fecal samples of dogs with chronic inflammatory enteropathy. FEMS Microbiology Ecology, 1, 93. https://doi.org/10.1093/femsec/fix136
  • Azad, M.B., Konya, T., Maughan, H., Guttman, D.S., Field, C.J., Sears, M.R., Becker, A.B., Scott, J.A., Kozyrskyj, A.L. (2013). Infant gut micro¬biota and the hygiene hypothesis of allergic disease: impa¬ct of household pets and siblings on microbiota composi¬tion and diversity. Allergy, Asthma & Clinical Immunology, 9, 15. https://doi.org/10.1186/1710-1492-9-15
  • Barko, P.C., McMichael, M.A., Swanson, K.S., & Williams D.A. (2018). The gastrointestinal microbiome: a review. Journal of veterinary internal medicine, 32(1), 9-25. https://doi.org/10.1111/jvim.14875
  • Belkaid, Y., & Hand, T.W. (2014). Role of the microbiota in immunity and inflammation. Cell, 157, 121-141. https://doi.org/10.1016/j.cell.2014.03.011
  • Belkaid, Y., & Naik, S. (2013). Compartmentalized and systemic control of tissue immunity by commensals. Nature Immunology, 14(7), 646-653. https://doi.org/10.1038/ni.2604
  • Benno, Y., Nakao, H., Uchida, K., & Mitsuoka, T. (1992). Impact of the advances in age on the gastrointestinal microflora of beagle dogs. The Journal of Veterinary Medical Science, 54, 703-706. https://doi.org/10.1292/jvms.54.703
  • Björkstén, B., Sepp, E., Julge, K., Voor T, & Mikelsaar, M. (2001). Allergy development and the intestinal microflora during the first year of life. Journal of Allergy and Clinical Immunology, 108, 516-520. https://doi.org/10.1067/mai.2001.118130
  • Canbulat, Z., & Ozcan, T. (2015). Effects of short-chain and longchain inulin on the quality of probiotic yogurt containing Lactobacilus rhamnosus. Journal of Food Processing and Preservation, 39(6), 1251-1260. https://doi.org/10.1111/jfpp.12343
  • Cénit, M.C., Matzaraki., V., Tigchelaar, E. F., & Zhernakova, A. (2014). Rapidly expanding knowledge on the role of the gut microbiome in health and disease. Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease, 1842(10), 1981-1992. https://doi.org/10.1016/j.bbadis.2014.05.023
  • Dayısoylu, K.S., Gezginç, Y., & Cingöz, A. (2014). Fonksiyonel gıda mı, fonksiyonel bileşen mi? Gıdalarda fonksiyonellik. Gıda, 39(1), 57-62. https://doi.org/10.5505/gida.03511
  • Eckburg, P.B., Bik, E.M., Bernstein, C.N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S.R., Nelson, K.E., & Relman, D.A. (2005). Diversity of the human ıntestinal microbial flora. Science, 308, 1635-1638. https://doi.org/10.1126/science.1110591
  • Erbaş, M. (2006): Yeni bir gıda grubu olarak fonksiyonel gıdalar. 791-794. In: Türkiye 9. Gıda Kongresi, 24-26 Mayıs 2006, Bolu, Türkiye.
  • Ericsson, A.C., Personett, A.R., Grobman, M.E., Rindt, H., & Reinero, C.R. (2016). Composition and predicted metabolic capacity of upper and lower airway microbiota of healthy dogs in re¬lation to the fecal microbiota. PLoS One, 11(5), e0154646. https://doi.org/10.1371/journal.pone.0154646
  • Ezell, J.M, Wegienka, G., Havstad, S., Ownby, D.R., Johnson, C.C., & Zoratti, E.M. (2013). Across-sectional analysis of pet-specific mmu¬noglobulin E sensitization and allergic symptomatology and household pet keeping in a birth cohort population. Allergy Asthma, 34, 504-510. https://doi.org/10.2500/aap.2013.34.3698
  • FAO/WHO. (2002). Guidelines for the evaluation of probiotics in food. FAO/WHO Working Group.
  • Fava, F., Gitau, R., Griffin, B., Gibson, G., Tuohy, K., & Lovegrove, J. (2013). The type and quantity of dietary fat and carbohydrate alter faecal microbiome and short-chain fatty acid excretion in a metabolic syndrome ‘atrisk’population. International Journal of Obesity, 37(2), 216. https://doi.org/10.1038/ijo.2012.33
  • Garcia-Mazcorro, J.F., Suchodolski, J.S., Jones, K.R., Clark,-Price, S.C., Dowd, S.E., Minamoto, Y., Markel, M., Steiner, J.M., & Dossin, O. (2012). Effect of the proton pump inhibitor omeprazole on the gast-rointestinal bacterial microbiota of healthy dogs. FEMS Microbiology Ecology, 80, 642-636. https://doi.org/10.1111/j.1574-6941.2012.01331.x
  • Grześkowiak, Ł., Endo, A., Beasley, S., & Salminen, S. (2015). Microbiota and probiotics in canine and feline welfare. Anaerobe, 34, 14-23. https://doi.org/10.1016/j.anaerobe.2015.04.002
  • Haller, D. (2018). The gut microbiome in health and disease. Springer.
  • Halmos, E.P., Christophersen, C.T., Bird, A.R., Shepherd, S.J., Gibson, P.R., & Muir, J.G. (2015). Diets that differ in their FODMAP content alter the colonic luminal microenvironment. Gut, 64(1), 93-100. https://doi.org/10.1136/gutjnl-2014-307264
  • Hansen, T.H., Gobel, R.J., Hansen, T., & Pedersen, O. (2015). The gut microbiome in cardio-metabolic health. Genome Medicine, 7(1), 33. https://doi.org/10.1186/s13073-015-0157-z
  • Hesselmar, B., Aberg, N., Aberg, B., Eriksson, B., & Bjorksten, B., (1999). Does early exposure to cat or dog protect against later aller¬gy development? Clinical & Experimental Allergy, 29, 611-617. https://doi.org/10.1046/j.1365-2222.1999.00534.x
  • Jernberg, C., Löfmark, S., Edlund, C., & Jansson, J.K. (2007). Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. The ISME Journal, 1, 56-66. https://doi.org/10.1038/ismej.2007.3
  • Kamada, N., Chen, G. Y, Inohara N., & Núñez G. (2013). Control of pathogens and pathobionts by the gut microbiota. Nature immunology, 14(7), 685-690. https://doi.org/10.1038/ni.2608
  • Köroğlu, M. (2017). Mikrobiyota çalışmalarında örnek alımı ve DNA izolasyonu. Journal of Biotechnology and Strategic Health Research, 1, 50-55.
  • Lauber, C.L., Hamady, M., Knight, R., & Fierer, N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology, 75, 5111-5120. https://doi.org/10.1128/AEM.00335-09
  • Lederberg, J., & McCray, A. T. (2001). Ome Sweet Omics--A genealogical treasury of words. The Scientist, 15(7), 8-8.
  • Ley, R.E., Hamady, M., Lozupone, C., Turnbaugh, P.J., Ramey, R.R., Bircher, J.S., Schlegel, M.L., Tucker, T.A., Schrenzel, M.D., Knight, R., & Gordon, J.I. (2008). Evolution of mammals and their gut microbes. Science 320, 1647-1651. https://doi.org/10.1126/science.1155725
  • Litonjua, A.A., Milton, D.K., Celedon, J.C., Ryan, L., Weiss, S.T., & Gold, D.R. (2002). A longitudinal analysis of wheezing in young children: the independent effects of early life exposure to house dust endotoxin, allergens, and pets. The Journal of Allergy and Clinical Immunology, 110, 736-742. https://doi.org/10.1067/mai.2002.128948
  • Lodge, C.J., Allen, K.J., Lowe, A.J., Hill, D.J., Hosking, C.S., Abramson, M.J., & Dharmage, S.C. (2012). Perinatal cat and dog exposure and the risk of asthma and allergy in the urban environment: a systematic review of longitudinal studies. Clinical and Developmental Immunology, 176484. https://doi.org/10.1155/2012/176484
  • Martín, M.J., Lara-Villoslada, F., Ruiz, M.A., & Morales, M.E. (2015). Microencapsulation of bacteria: A review of different technologies and their impact on the probiotic effects. Innovative Food Science and Emerging Technologies, 27, 15-25. https://doi.org/10.1016/j.ifset.2014.09.010
  • Nermes, M., Niinivirta, K., Nylund, L., Laitinen, K., Matomaki, J., Salmi¬nen, S., & Isolauri, E. (2013). Perinatal pet exposure, faecal mic¬robiota, and wheezy bronchitis: is there a connection?. ISRN Allergy, 827934. https://doi.org/10.1155/2013/827934
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There are 55 citations in total.

Details

Primary Language English
Subjects Veterinary Surgery
Journal Section Reviews
Authors

Ayşegül Demircioğlu 0000-0002-5121-2631

Muhammed Demircioğlu This is me 0000-0001-8082-8630

Migena Gjoni Gündemir This is me 0000-0002-6342-6063

Publication Date December 31, 2022
Submission Date November 7, 2022
Published in Issue Year 2022 Volume: 1 Issue: 2

Cite

APA Demircioğlu, A., Demircioğlu, M., & Gjoni Gündemir, M. (2022). The microbiota of humans and animals and its relationship with the use of functional foods. Veterinary Journal of Kastamonu University, 1(2), 32-41.