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SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU

Yıl 2018, Cilt: 7 Sayı: 1, 1 - 11, 28.02.2018
https://doi.org/10.18036/aubtdc.305855

Öz

Bu çalışmada Sivas’ta bulunan farklı solar tuzlalardan halofilik mikroorganizmaların izolasyonu yapılmıştır ve elde edilen izolatların 16S rRNA gen analizine dayalı karakterizasyonu gerçekleştirilmiştir. İzolasyon işlemi farklı tuz konsantrasyonları ile hazırlanmış 5 farklı besiyeri ile gerçekleştirilmiştir. Morfolojik olarak farklılık gösteren kolonilerin 16S rRNA genleri ARDRA ile analiz edilmiştir ve kesim profilleri karşılaştırılmıştır. 47 adet suş tanımlama amacıyla seçilmiştir. Bacteria domaini içerisinde yer alan izolatların Idiomarina, Salinivibrio, Halomonas, Salinibacter, Gracilibacillus, Thalassobacillus, Aliifodinibius, Chromohalobacter, Planococcus, Marinobacter, Bacillus, Aquisalimonas, Marinococcus, Alkalibacillus, Kangiella ve Microbulbifer cinsleri ile filogenetik olarak ilişkili olduğu saptanmıştır. Halofilik arke izolatları ise Haloferax, Natrinema, Haloterrigena, Halopelagius, Halorhabdus ve Haloarcula cinsleri içerisinde dağılım göstermiştir.

Kaynakça

  • [1] Oren A. Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. Journal of Industrial Microbiology and Biotechnology 2002; 28:56-63.
  • [2] Oren A. Industrial and environmental applications of halophilic microorganisms. Environmental Technology 2010; 31:825-834.
  • [3] Antón J., Rosselló-Mora R., Rodríguez-Valera F., Amann R. Extremely halophilic bacteria in crystallizer ponds from solar salterns. Applied and Environmental Microbiology 2000; 66:3052-3057.
  • [4] Burns D.G., Camakaris H.M., Janssen P.H., Dyall-Smith M.L. Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Applied and Environmental Microbiology 2004; 70:5258-5265
  • [5] Baati H., Guermazi S., Amdouni R., Gharsallah N., Sghir A., Ammar E. Prokaryotic diversity of a Tunisian multipond solar saltern. Extremophiles 2008; 12:505-518.
  • [6] Taşman C.E. Tuzlarımız. MTA Dergisi 1945; 33:105-108.
  • [7] Ergin Z. Tuzun üretim teknolojisi ve insan sağlığındaki yeri. Madencilik Dergisi 1988; 27:21-30.
  • [8] Stchepinsky V. Sivas Vilâyeti İdrokarbürleri, Liğnitleri ve Tuzlu Menbaları, MTA Dergisi 1939; 4:88-94
  • [9] Yazıcı H., Başıbüyük A., Altınbilek S. Kemah (Erzincan) Tuzlaları. Türk Coğrafya Dergisi 1998; 33:53-78
  • [10] Rodrı́guez-Valera F., Ventosa A., Juez G., Imhoff J.F. Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microbial Ecology 1985; 11:107-115.
  • [11] Oren A. Estimation of the contribution of halobacterial to the bacterial biomass and activity in solar salterns by the use of bile salts. FEMS Microbiology Ecology 1990; 6:41-47.
  • [12] Dyall-Smith M.L. The Halohandbook- Protocols for Haloarchaeal Genetics, Version 7.2, 2009; (http://www.haloarchaea.com/resources/halohandbook /index.html).
  • [13] DeLong E.F. Archaea in coastal marine environments. Proceedings of the National Academy of Sciences 1992; 89:5685-5689.
  • [14] Lane D. J., Pace B., Olsen G.J., Stahl D.A., Sogin M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences 1985; 82:6955-6959.
  • [15] Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evolutionary Biology 2010; 10:8.
  • [16] Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M. et al. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 2008; 36:W465-W469
  • [17] Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 2004; 32:1792-1797.
  • [18] Yaşa İ., Kahraman Ö., Tekin E., Koçyiğit A. Çamaltı Tuzlasından Ekstrem Halofilik Archaea İzolasyonu ve Moleküler Karakterizasyonu. E.Ü. Su Ürünleri Dergisi 2008; 2:117-121.
  • [19] Mutlu M.B., Güven K. Bacterial Diversity in Çamaltı Saltern, Turkey. Polish Journal of Microbiology 2015; 64:37-45.
  • [20] Elevi R., Assa P., Birbir M., Ogan A., Oren A. Characterization of extremely halophilic Archaea isolated from the Ayvalik Saltern, Turkey. World Journal of Microbiology and Biotechnology 2004; 20:719-725.
  • [21] Birbir M., Calli B., Mertoglu B., Bardavid R.E., Oren A., Ogmen M.N., Ogan A. Extremely halophilic Archaea from Tuz Lake, Turkey, and the adjacent Kaldırım and Kayacık salterns. World Journal of Microbiology and Biotechnology 2007; 23:309-316.
  • [22] Viver T., Cifuentes A., Díaz S., Rodríguez-Valdecantos G., González B., Antón J., Rosselló-Móra R. Diversity of extremely halophilic cultivable prokaryotes in Mediterranean, Atlantic and Pacific solar salterns: evidence that unexplored sites constitute sources of cultivable novelty. Systematic and Applied Microbiology 2015; 38:266-275.
  • [23] Sabet S., Diallo L., Hays L., Jung W., Dillon J.G. Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles 2009; 13:643-656.
  • [24] Maturrano L., Santos F., Rosselló-Mora R., Antón J. Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Applied and Environmental Microbiology 2006; 72:3887-3895.
  • [25] Çınar S., Mutlu M.B. Comparative analysis of prokaryotic diversity in solar salterns in eastern Anatolia (Turkey). Extremophiles 2016; 20:589-601.
  • [26] Burns D.G., Janssen P.H., Itoh T., Kamekura M., Li Z., Jensen G., Rodrı́guez-Valera F., Bolhuis H., Dyall-Smith, M.L. Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. International Journal of Systematic and Evolutionary Microbiology 2007; 57:387-392.
  • [27] Enache M., Itoh T., Kamekura M., Teodosiu G., Dumitru L. Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. International Journal of Systematic and Evolutionary Microbiology 2007; 57:393-397.
  • [28] Caton T.M., Witte L.R., Ngyuen H.D., Buchheim J.A., Buchheim M.A., Schneegurt M.A. Halotolerant aerobic heterotrophic bacteria from the Great Salt Plains of Oklahoma. Microbial Ecology 2004; 48:449-462.

CULTIVATION-BASED CHARACTERIZATION of MICROBIAL ASSEMBLAGES in SOLAR SALTERNS, SİVAS

Yıl 2018, Cilt: 7 Sayı: 1, 1 - 11, 28.02.2018
https://doi.org/10.18036/aubtdc.305855

Öz

In this study, halophilic microorganisms were isolated from different solar salterns in Sivas and characterization of these isolates based on 16S rRNA gene analysis have been performed. Isolation was done by using 5 different media prepared with different salt concentrations. 16S rRNA genes of morphologically distinct colonies were analyzed by ARDRA and restriction profiles were compared. 47 strains were selected for identification purposes. It has been determined that the isolates in the Bacteria domain are phylogenetically related to genera Idiomarina, Salinivibrio, Halomonas, Salinibacter, Gracilibacillus, Thalassobacillus, Aliifodinibius, Chromohalobacter, Planococcus, Marinobacter, Bacillus, Aquisalimonas, Marinococcus, Alkalibacillus, Kangiella and Microbulbifer. Halophilic archaeal isolates were distributed among genera Haloferax, Natrinema, Haloterrigena, Halopelagius, Halorhabdus and Haloarcula.

Kaynakça

  • [1] Oren A. Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. Journal of Industrial Microbiology and Biotechnology 2002; 28:56-63.
  • [2] Oren A. Industrial and environmental applications of halophilic microorganisms. Environmental Technology 2010; 31:825-834.
  • [3] Antón J., Rosselló-Mora R., Rodríguez-Valera F., Amann R. Extremely halophilic bacteria in crystallizer ponds from solar salterns. Applied and Environmental Microbiology 2000; 66:3052-3057.
  • [4] Burns D.G., Camakaris H.M., Janssen P.H., Dyall-Smith M.L. Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable. Applied and Environmental Microbiology 2004; 70:5258-5265
  • [5] Baati H., Guermazi S., Amdouni R., Gharsallah N., Sghir A., Ammar E. Prokaryotic diversity of a Tunisian multipond solar saltern. Extremophiles 2008; 12:505-518.
  • [6] Taşman C.E. Tuzlarımız. MTA Dergisi 1945; 33:105-108.
  • [7] Ergin Z. Tuzun üretim teknolojisi ve insan sağlığındaki yeri. Madencilik Dergisi 1988; 27:21-30.
  • [8] Stchepinsky V. Sivas Vilâyeti İdrokarbürleri, Liğnitleri ve Tuzlu Menbaları, MTA Dergisi 1939; 4:88-94
  • [9] Yazıcı H., Başıbüyük A., Altınbilek S. Kemah (Erzincan) Tuzlaları. Türk Coğrafya Dergisi 1998; 33:53-78
  • [10] Rodrı́guez-Valera F., Ventosa A., Juez G., Imhoff J.F. Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microbial Ecology 1985; 11:107-115.
  • [11] Oren A. Estimation of the contribution of halobacterial to the bacterial biomass and activity in solar salterns by the use of bile salts. FEMS Microbiology Ecology 1990; 6:41-47.
  • [12] Dyall-Smith M.L. The Halohandbook- Protocols for Haloarchaeal Genetics, Version 7.2, 2009; (http://www.haloarchaea.com/resources/halohandbook /index.html).
  • [13] DeLong E.F. Archaea in coastal marine environments. Proceedings of the National Academy of Sciences 1992; 89:5685-5689.
  • [14] Lane D. J., Pace B., Olsen G.J., Stahl D.A., Sogin M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences 1985; 82:6955-6959.
  • [15] Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evolutionary Biology 2010; 10:8.
  • [16] Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M. et al. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 2008; 36:W465-W469
  • [17] Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 2004; 32:1792-1797.
  • [18] Yaşa İ., Kahraman Ö., Tekin E., Koçyiğit A. Çamaltı Tuzlasından Ekstrem Halofilik Archaea İzolasyonu ve Moleküler Karakterizasyonu. E.Ü. Su Ürünleri Dergisi 2008; 2:117-121.
  • [19] Mutlu M.B., Güven K. Bacterial Diversity in Çamaltı Saltern, Turkey. Polish Journal of Microbiology 2015; 64:37-45.
  • [20] Elevi R., Assa P., Birbir M., Ogan A., Oren A. Characterization of extremely halophilic Archaea isolated from the Ayvalik Saltern, Turkey. World Journal of Microbiology and Biotechnology 2004; 20:719-725.
  • [21] Birbir M., Calli B., Mertoglu B., Bardavid R.E., Oren A., Ogmen M.N., Ogan A. Extremely halophilic Archaea from Tuz Lake, Turkey, and the adjacent Kaldırım and Kayacık salterns. World Journal of Microbiology and Biotechnology 2007; 23:309-316.
  • [22] Viver T., Cifuentes A., Díaz S., Rodríguez-Valdecantos G., González B., Antón J., Rosselló-Móra R. Diversity of extremely halophilic cultivable prokaryotes in Mediterranean, Atlantic and Pacific solar salterns: evidence that unexplored sites constitute sources of cultivable novelty. Systematic and Applied Microbiology 2015; 38:266-275.
  • [23] Sabet S., Diallo L., Hays L., Jung W., Dillon J.G. Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles 2009; 13:643-656.
  • [24] Maturrano L., Santos F., Rosselló-Mora R., Antón J. Microbial diversity in Maras salterns, a hypersaline environment in the Peruvian Andes. Applied and Environmental Microbiology 2006; 72:3887-3895.
  • [25] Çınar S., Mutlu M.B. Comparative analysis of prokaryotic diversity in solar salterns in eastern Anatolia (Turkey). Extremophiles 2016; 20:589-601.
  • [26] Burns D.G., Janssen P.H., Itoh T., Kamekura M., Li Z., Jensen G., Rodrı́guez-Valera F., Bolhuis H., Dyall-Smith, M.L. Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. International Journal of Systematic and Evolutionary Microbiology 2007; 57:387-392.
  • [27] Enache M., Itoh T., Kamekura M., Teodosiu G., Dumitru L. Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. International Journal of Systematic and Evolutionary Microbiology 2007; 57:393-397.
  • [28] Caton T.M., Witte L.R., Ngyuen H.D., Buchheim J.A., Buchheim M.A., Schneegurt M.A. Halotolerant aerobic heterotrophic bacteria from the Great Salt Plains of Oklahoma. Microbial Ecology 2004; 48:449-462.
Toplam 28 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Bölüm Araştırma Makalesi
Yazarlar

Mehmet Burçin Mutlu

Seval Çınar

Yayımlanma Tarihi 28 Şubat 2018
Yayımlandığı Sayı Yıl 2018 Cilt: 7 Sayı: 1

Kaynak Göster

APA Mutlu, M. B., & Çınar, S. (2018). SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology, 7(1), 1-11. https://doi.org/10.18036/aubtdc.305855
AMA Mutlu MB, Çınar S. SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology. Şubat 2018;7(1):1-11. doi:10.18036/aubtdc.305855
Chicago Mutlu, Mehmet Burçin, ve Seval Çınar. “SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU”. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology 7, sy. 1 (Şubat 2018): 1-11. https://doi.org/10.18036/aubtdc.305855.
EndNote Mutlu MB, Çınar S (01 Şubat 2018) SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology 7 1 1–11.
IEEE M. B. Mutlu ve S. Çınar, “SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU”, Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology, c. 7, sy. 1, ss. 1–11, 2018, doi: 10.18036/aubtdc.305855.
ISNAD Mutlu, Mehmet Burçin - Çınar, Seval. “SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU”. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology 7/1 (Şubat 2018), 1-11. https://doi.org/10.18036/aubtdc.305855.
JAMA Mutlu MB, Çınar S. SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology. 2018;7:1–11.
MLA Mutlu, Mehmet Burçin ve Seval Çınar. “SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU”. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology, c. 7, sy. 1, 2018, ss. 1-11, doi:10.18036/aubtdc.305855.
Vancouver Mutlu MB, Çınar S. SİVAS’IN SOLAR TUZLALARINDAKİ MİKROBİYAL TOPLULUKLARIN KÜLTÜRBAĞIMLI KARAKTERİZASYONU. Anadolu University Journal of Science and Technology C - Life Sciences and Biotechnology. 2018;7(1):1-11.