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Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods

Yıl 2024, , 1 - 11, 30.06.2024
https://doi.org/10.29132/ijpas.1376725

Öz

Norepinephrine plays an important role in many processes such as stress response, attention, alertness, blood pressure regulation, neurotransmission and emotional states. In this study, the molecule was optimized in order to get knowledge about the formation of the Ca+2 doped norepinephrine complex and the functions of norepinephrine in neurotransmission or other cellular processes by interacting with calcium. Quantum mechanical calculations such as FT-IR, Nuclear Magnetic Resonance (NMR), HO-MO-LUMO structure with the energy level diagram, UV-visible absorption, The density of states (DOS) of the optimized molecule were performed. The physical and chemical structure characteristics of the norepinephrine molecule and the change of its structural properties by molecular bonding with Ca+2 were investigated.

Kaynakça

  • Silverberg, A. B., Shah, S. D., Haymond, M. W., & Cryer, P. E. (1978). norepinephrine: hormone and neurotransmitter in man. American Journal of Physiology-Endocrinology and Metabolism, 234(3), E252.
  • Schwarz, L. A., & Luo, L. (2015). Organization of the locus coeruleus-norepinephrine sys-tem. Current Biology, 25(21), R1051-R1056.
  • Moret, C., & Briley, M. (2011). The importance of norepinephrine in depres-sion. Neuropsychiatric disease and treatment, 7(sup1), 9-13.
  • Ressler, K. J., & Nemeroff, C. B. (1999). Role of norepinephrine in the pathophysiology and treatment of mood disorders. Biological psychiatry, 46(9), 1219-1233.
  • Goddard, A. W., Ball, S. G., Martinez, J., Robinson, M. J., Yang, C. R., Russell, J. M., & Shekhar, A. (2010). Current perspectives of the roles of the central norepinephrine system in anxiety and depression. Depression and anxiety, 27(4), 339-350.
  • Nutt, D. J., Baldwin, D. S., & Clayton, A. H. (2006). The role of dopamine and norepinephrine in depression and antidepressant treatment. Journal of Clinical Psychiatry, 67(Suppl 6), 3-8.
  • Shellenberger, M. K., & Gordon, J. H. (1971). A rapid, simplified procedure for simultaneous assay of norepinephrine, dopamine, and 5-hydroxytryptamine from discrete brain are-as. Analytical Biochemistry, 39(2), 356-372.
  • Turner, M. (1971). Ball and stick models for organic chemistry. Journal of Chemical Educa-tion, 48(6), 407.
  • Paukert, M., Agarwal, A., Cha, J., Doze, V. A., Kang, J. U., & Bergles, D. E. (2014). norepi-nephrine controls astroglial responsiveness to local circuit activity. Neuron, 82(6), 1263-1270.
  • [Dennington, R., Keith, T. A., & Millam, J. M. (2016). GaussView, version 6.0. 16. Semichem Inc Shawnee Mission KS.
  • Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., ... & Cioslowski, J. (2009). Uranyl Extraction by N, N-Dialkylamide Ligands Studied by Static and Dynamic DFT Simulations. In Gaussian 09. Gaussian Inc Wallingford.
  • O'boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2008). Cclib: a library for package‐independent computational chemistry algorithms. Journal of computational chemistry, 29(5), 839-845.
  • Kebiroğlu, H. (2023). Investigation of Electronic and Spectroscopic Properties of Ca-Phosphosilicate molecule by Quantum Programming. Journal of Physical Chemistry and Functional Materials, 6(1), 77-82.
  • Yılmaz, M., & Kebiroglu, H. (2022). Investigation of K-Serotonin Structure Using Nuclear Magnetic Resonance by Quantum Chemical Methods. Journal of Physical Chemistry and Func-tional Materials, 5(2), 49-55.
  • Jacquemin, D., Wathelet, V., Perpete, E. A., & Adamo, C. (2009). Extensive TD-DFT benchmark: singlet-excited states of organic molecules. Journal of Chemical Theory and Com-putation, 5(9), 2420-2435.
  • Head-Gordon, M., Rico, R. J., Oumi, M., & Lee, T. J. (1994). A doubles correction to elec-tronic excited states from configuration interaction in the space of single substitutions. Chemical Physics Letters, 219(1-2), 21-29.
  • Pandey, U., Srivastava, M., Singh, R. P., & Yadav, R. A. (2014). DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 129, 61-73.
  • Xie, B., Wang, Q., Long, X., Hu, S., & Gao, T. (2020). Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. Journal of Wuhan University of Technology-Mater. Sci. Ed., 35, 501-505.
  • Magyar, R. J., Tretiak, S., Gao, Y., Wang, H. L., & Shreve, A. P. (2005). A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chemical physics let-ters, 401(1-3), 149-156.
Yıl 2024, , 1 - 11, 30.06.2024
https://doi.org/10.29132/ijpas.1376725

Öz

Kaynakça

  • Silverberg, A. B., Shah, S. D., Haymond, M. W., & Cryer, P. E. (1978). norepinephrine: hormone and neurotransmitter in man. American Journal of Physiology-Endocrinology and Metabolism, 234(3), E252.
  • Schwarz, L. A., & Luo, L. (2015). Organization of the locus coeruleus-norepinephrine sys-tem. Current Biology, 25(21), R1051-R1056.
  • Moret, C., & Briley, M. (2011). The importance of norepinephrine in depres-sion. Neuropsychiatric disease and treatment, 7(sup1), 9-13.
  • Ressler, K. J., & Nemeroff, C. B. (1999). Role of norepinephrine in the pathophysiology and treatment of mood disorders. Biological psychiatry, 46(9), 1219-1233.
  • Goddard, A. W., Ball, S. G., Martinez, J., Robinson, M. J., Yang, C. R., Russell, J. M., & Shekhar, A. (2010). Current perspectives of the roles of the central norepinephrine system in anxiety and depression. Depression and anxiety, 27(4), 339-350.
  • Nutt, D. J., Baldwin, D. S., & Clayton, A. H. (2006). The role of dopamine and norepinephrine in depression and antidepressant treatment. Journal of Clinical Psychiatry, 67(Suppl 6), 3-8.
  • Shellenberger, M. K., & Gordon, J. H. (1971). A rapid, simplified procedure for simultaneous assay of norepinephrine, dopamine, and 5-hydroxytryptamine from discrete brain are-as. Analytical Biochemistry, 39(2), 356-372.
  • Turner, M. (1971). Ball and stick models for organic chemistry. Journal of Chemical Educa-tion, 48(6), 407.
  • Paukert, M., Agarwal, A., Cha, J., Doze, V. A., Kang, J. U., & Bergles, D. E. (2014). norepi-nephrine controls astroglial responsiveness to local circuit activity. Neuron, 82(6), 1263-1270.
  • [Dennington, R., Keith, T. A., & Millam, J. M. (2016). GaussView, version 6.0. 16. Semichem Inc Shawnee Mission KS.
  • Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., ... & Cioslowski, J. (2009). Uranyl Extraction by N, N-Dialkylamide Ligands Studied by Static and Dynamic DFT Simulations. In Gaussian 09. Gaussian Inc Wallingford.
  • O'boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2008). Cclib: a library for package‐independent computational chemistry algorithms. Journal of computational chemistry, 29(5), 839-845.
  • Kebiroğlu, H. (2023). Investigation of Electronic and Spectroscopic Properties of Ca-Phosphosilicate molecule by Quantum Programming. Journal of Physical Chemistry and Functional Materials, 6(1), 77-82.
  • Yılmaz, M., & Kebiroglu, H. (2022). Investigation of K-Serotonin Structure Using Nuclear Magnetic Resonance by Quantum Chemical Methods. Journal of Physical Chemistry and Func-tional Materials, 5(2), 49-55.
  • Jacquemin, D., Wathelet, V., Perpete, E. A., & Adamo, C. (2009). Extensive TD-DFT benchmark: singlet-excited states of organic molecules. Journal of Chemical Theory and Com-putation, 5(9), 2420-2435.
  • Head-Gordon, M., Rico, R. J., Oumi, M., & Lee, T. J. (1994). A doubles correction to elec-tronic excited states from configuration interaction in the space of single substitutions. Chemical Physics Letters, 219(1-2), 21-29.
  • Pandey, U., Srivastava, M., Singh, R. P., & Yadav, R. A. (2014). DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 129, 61-73.
  • Xie, B., Wang, Q., Long, X., Hu, S., & Gao, T. (2020). Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. Journal of Wuhan University of Technology-Mater. Sci. Ed., 35, 501-505.
  • Magyar, R. J., Tretiak, S., Gao, Y., Wang, H. L., & Shreve, A. P. (2005). A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chemical physics let-ters, 401(1-3), 149-156.
Toplam 19 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Atom ve Molekül Fiziği
Bölüm Makaleler
Yazarlar

Mücahit Yılmaz 0000-0003-0048-2233

Hanifi Kebiroglu 0000-0002-6764-3364

Erken Görünüm Tarihi 28 Haziran 2024
Yayımlanma Tarihi 30 Haziran 2024
Gönderilme Tarihi 16 Ekim 2023
Kabul Tarihi 9 Mayıs 2024
Yayımlandığı Sayı Yıl 2024

Kaynak Göster

APA Yılmaz, M., & Kebiroglu, H. (2024). Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods. International Journal of Pure and Applied Sciences, 10(1), 1-11. https://doi.org/10.29132/ijpas.1376725
AMA Yılmaz M, Kebiroglu H. Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods. International Journal of Pure and Applied Sciences. Haziran 2024;10(1):1-11. doi:10.29132/ijpas.1376725
Chicago Yılmaz, Mücahit, ve Hanifi Kebiroglu. “Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods”. International Journal of Pure and Applied Sciences 10, sy. 1 (Haziran 2024): 1-11. https://doi.org/10.29132/ijpas.1376725.
EndNote Yılmaz M, Kebiroglu H (01 Haziran 2024) Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods. International Journal of Pure and Applied Sciences 10 1 1–11.
IEEE M. Yılmaz ve H. Kebiroglu, “Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods”, International Journal of Pure and Applied Sciences, c. 10, sy. 1, ss. 1–11, 2024, doi: 10.29132/ijpas.1376725.
ISNAD Yılmaz, Mücahit - Kebiroglu, Hanifi. “Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods”. International Journal of Pure and Applied Sciences 10/1 (Haziran 2024), 1-11. https://doi.org/10.29132/ijpas.1376725.
JAMA Yılmaz M, Kebiroglu H. Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods. International Journal of Pure and Applied Sciences. 2024;10:1–11.
MLA Yılmaz, Mücahit ve Hanifi Kebiroglu. “Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods”. International Journal of Pure and Applied Sciences, c. 10, sy. 1, 2024, ss. 1-11, doi:10.29132/ijpas.1376725.
Vancouver Yılmaz M, Kebiroglu H. Nuclear Magnetic Resonance and Quantum Chemical Calculations of Ca+2 Doped Norepinephrine Molecule by Using DFT and HF Methods. International Journal of Pure and Applied Sciences. 2024;10(1):1-11.

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