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Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method

Yıl 2023, , 145 - 151, 18.12.2023
https://doi.org/10.54565/jphcfum.1332113

Öz

The research focused on investigating and optimizing the interaction of the hormone Norepinephrine (Noradrenaline), which acts as a neurotransmitter, with Mg+2 atoms at the molecular level. To do this, we used GaussView 6.0.16 to generate the molecular structure. Then, it employed Gaussian 09: AS64L-G09RevD.01 program to optimize the molecular structures of Norepinephrine using the DFT method and SDD basis set, and the Mg atom doped molecule using the DFT method and LanL2MB basis set. Various quantum mechanical calculations were conducted on the molecule, including Fourier Transform Infrared spectroscopy (FT-IR), Nuclear Magnetic Resonance Spectroscopy (NMR), HOMO-LUMO structure with the energy level diagram, UV-visible absorption, and density of states (DOS). These calculations provide important insights into the behavior and properties of the Norepinephrine-Mg+2 complex at the molecular level.

Kaynakça

  • Breton-Provencher V, Drummond GT and Sur M (2021) Locus Coeruleus Norepinephrine in Learned Behavior: Anatomical Modularity and Spatiotemporal Integration in Targets. Front. Neural Circuits 15:638007. doi: 10.3389/fncir.2021.638007
  • Gümrü, S. , Şahin, C. & Arıcıoğlu, F. (2013). Yeni bir nörotransmitter/nöromodülatör olarak agmatine genel bir bakış . Clinical and Experimental Health Sciences , 3 (5) , 0-0
  • Durmaz, C. & Şen, E. (2022). Kök Hücrelerde DNA Hasarı ve Onarımı . Tıp Fakültesi Klinikleri Dergisi , 5 (1) , 19-26 .
  • Schwalfenberg, G. K., & Genuis, S. J. (2017). The Importance of Magnesium in Clinical Healthcare. Scientifica, 2017, 4179326. https://doi.org/10.1155/2017/4179326
  • Dennington R.D., Keith T.A., Millam J.M., GaussView 6.0. 16, Semichem. Inc., Shawnee Mission KS, 2016.
  • Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Nakatsuji H., Gaussian09 Revision D. 01, Gaussian Inc.,Wallingford CT, 2009.
  • Sebastianelli, P, Pereyra, RG. Frontier molecular orbital analysis for determining the equilibrium geometries of atmospheric prenucleation complexes. Int J Quantum Chem. 2020; 120:e26060. https://doi.org/10.1002/qua.26060
  • Kumer, A. , Sarker, M. N. & Paul, S. (2019). The thermo physical, HOMO, LUMO, Vibrational spectroscopy and QSAR study of morphonium formate and acetate Ionic Liquid Salts using computational method. Turkish Computational and Theoretical Chemistry, 3 (2), 59-68.
  • Tanış, E. (2022). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46(5), 1607-1619.
  • Tanış, E. (2022). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161.
  • Cameron, J. M., et al. (2020). Chapter 10 - Vibrational spectroscopic analysis and quantification of proteins in human blood plasma and serum. Vibrational Spectroscopy in Protein Research. Y. Ozaki, M. Baranska, I. K. Lednev and B. R. Wood, Academic Press: 269-314.
  • Siesler, H. W. (2016). Vibrational Spectroscopy. Reference Module in Materials Science and Materials Engineering, Elsevier. Tanış, E. (2022). Study of Electronic, Optoelectronic and Photonic Properties of NBB Material in Solvent Environments. Journal of Electronic Materials, 51(9), 4978-4985.
  • Thambiratnam, K., et al. (2020). Chapter 9 - Application of two-dimensional materials in fiber laser systems. Nano-Optics. S. Thomas, Y. Grohens, G. Vignaud, N. Kalarikkal and J. James, Elsevier: 227-264.
  • Nerli, S., McShan, A. C., & Sgourakis, N. G. (2018). Chemical shift-based methods in NMR structure determination. Progress in nuclear magnetic resonance spectroscopy, 106-107, 1–25.
  • Nerli, S., et al. (2018). "Chemical shift-based methods in NMR structure determination." Progress in Nuclear Magnetic Resonance Spectroscopy 106-107: 1-25.
  • Schmid, F. X. 2001. Biological macromolecules: UV‐visible spectrophotometry. eLS.
  • Pandey, U.; Srivastava, M.; Singh, R.; Yadav, R. DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 2014, 129, 61–73.
  • Xie, B.; Wang, Q.; Long, X.; Hu, S.; Gao, T. Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. J. Wuhan Univ. Technol. Sci. Ed. 2020, 35, 501–505.
  • Magyar, R.; Tretiak, S.; Gao, Y.; Wang, H.-L.; Shreve, A. A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chem. Phys. Lett. 2005, 401, 149–156.
Yıl 2023, , 145 - 151, 18.12.2023
https://doi.org/10.54565/jphcfum.1332113

Öz

Kaynakça

  • Breton-Provencher V, Drummond GT and Sur M (2021) Locus Coeruleus Norepinephrine in Learned Behavior: Anatomical Modularity and Spatiotemporal Integration in Targets. Front. Neural Circuits 15:638007. doi: 10.3389/fncir.2021.638007
  • Gümrü, S. , Şahin, C. & Arıcıoğlu, F. (2013). Yeni bir nörotransmitter/nöromodülatör olarak agmatine genel bir bakış . Clinical and Experimental Health Sciences , 3 (5) , 0-0
  • Durmaz, C. & Şen, E. (2022). Kök Hücrelerde DNA Hasarı ve Onarımı . Tıp Fakültesi Klinikleri Dergisi , 5 (1) , 19-26 .
  • Schwalfenberg, G. K., & Genuis, S. J. (2017). The Importance of Magnesium in Clinical Healthcare. Scientifica, 2017, 4179326. https://doi.org/10.1155/2017/4179326
  • Dennington R.D., Keith T.A., Millam J.M., GaussView 6.0. 16, Semichem. Inc., Shawnee Mission KS, 2016.
  • Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Nakatsuji H., Gaussian09 Revision D. 01, Gaussian Inc.,Wallingford CT, 2009.
  • Sebastianelli, P, Pereyra, RG. Frontier molecular orbital analysis for determining the equilibrium geometries of atmospheric prenucleation complexes. Int J Quantum Chem. 2020; 120:e26060. https://doi.org/10.1002/qua.26060
  • Kumer, A. , Sarker, M. N. & Paul, S. (2019). The thermo physical, HOMO, LUMO, Vibrational spectroscopy and QSAR study of morphonium formate and acetate Ionic Liquid Salts using computational method. Turkish Computational and Theoretical Chemistry, 3 (2), 59-68.
  • Tanış, E. (2022). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46(5), 1607-1619.
  • Tanış, E. (2022). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161.
  • Cameron, J. M., et al. (2020). Chapter 10 - Vibrational spectroscopic analysis and quantification of proteins in human blood plasma and serum. Vibrational Spectroscopy in Protein Research. Y. Ozaki, M. Baranska, I. K. Lednev and B. R. Wood, Academic Press: 269-314.
  • Siesler, H. W. (2016). Vibrational Spectroscopy. Reference Module in Materials Science and Materials Engineering, Elsevier. Tanış, E. (2022). Study of Electronic, Optoelectronic and Photonic Properties of NBB Material in Solvent Environments. Journal of Electronic Materials, 51(9), 4978-4985.
  • Thambiratnam, K., et al. (2020). Chapter 9 - Application of two-dimensional materials in fiber laser systems. Nano-Optics. S. Thomas, Y. Grohens, G. Vignaud, N. Kalarikkal and J. James, Elsevier: 227-264.
  • Nerli, S., McShan, A. C., & Sgourakis, N. G. (2018). Chemical shift-based methods in NMR structure determination. Progress in nuclear magnetic resonance spectroscopy, 106-107, 1–25.
  • Nerli, S., et al. (2018). "Chemical shift-based methods in NMR structure determination." Progress in Nuclear Magnetic Resonance Spectroscopy 106-107: 1-25.
  • Schmid, F. X. 2001. Biological macromolecules: UV‐visible spectrophotometry. eLS.
  • Pandey, U.; Srivastava, M.; Singh, R.; Yadav, R. DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 2014, 129, 61–73.
  • Xie, B.; Wang, Q.; Long, X.; Hu, S.; Gao, T. Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. J. Wuhan Univ. Technol. Sci. Ed. 2020, 35, 501–505.
  • Magyar, R.; Tretiak, S.; Gao, Y.; Wang, H.-L.; Shreve, A. A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chem. Phys. Lett. 2005, 401, 149–156.
Toplam 19 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Klasik Fizik (Diğer)
Bölüm Makaleler
Yazarlar

Hanifi Kebiroglu 0000-0002-6764-3364

Mücahit Yılmaz 0000-0003-0048-2233

Yayımlanma Tarihi 18 Aralık 2023
Gönderilme Tarihi 24 Temmuz 2023
Kabul Tarihi 3 Ağustos 2023
Yayımlandığı Sayı Yıl 2023

Kaynak Göster

APA Kebiroglu, H., & Yılmaz, M. (2023). Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials, 6(2), 145-151. https://doi.org/10.54565/jphcfum.1332113
AMA Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. Aralık 2023;6(2):145-151. doi:10.54565/jphcfum.1332113
Chicago Kebiroglu, Hanifi, ve Mücahit Yılmaz. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials 6, sy. 2 (Aralık 2023): 145-51. https://doi.org/10.54565/jphcfum.1332113.
EndNote Kebiroglu H, Yılmaz M (01 Aralık 2023) Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials 6 2 145–151.
IEEE H. Kebiroglu ve M. Yılmaz, “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”, Journal of Physical Chemistry and Functional Materials, c. 6, sy. 2, ss. 145–151, 2023, doi: 10.54565/jphcfum.1332113.
ISNAD Kebiroglu, Hanifi - Yılmaz, Mücahit. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials 6/2 (Aralık 2023), 145-151. https://doi.org/10.54565/jphcfum.1332113.
JAMA Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. 2023;6:145–151.
MLA Kebiroglu, Hanifi ve Mücahit Yılmaz. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials, c. 6, sy. 2, 2023, ss. 145-51, doi:10.54565/jphcfum.1332113.
Vancouver Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. 2023;6(2):145-51.