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CORONAVIRIDAE VIRUS FAMILY: AN OVERALL ASSESSMENT

Year 2020, Volume: 5 Issue: 1, 1 - 12, 30.04.2020

Hikmet Ün

Abstract

Coronaviruses (CoVs) are non-segmented, enveloped positive-sense RNA viruses, with a genome of approximately 30 kb and a unique replication strategy named after their corona-like or crown-like surface projections seen on electron microscopy. Coronaviruses cause a variety of diseases in mammals, rodents and birds ranging from mild to severe enteritis, pneumonia, encephalitis and systemic diseases. Millions of people are at severe risk due to zoonotic transmission of CoVs in the World. In the present article, it has been reviewed the literature on the overall assessment of coronaviruses.

Keywords

Nidovirales coronavirus positive-sense RNA viruses animal coronaviruses human coronaviruses

References

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  • Decaro, N., Campolo, M., Lorusso, A., Desario, C., Mari, V., Colaianni, M.L., Elia, G., Martella, V., Buonavoglia, C. (2008). Experimental infection of dogs with a novel strain of canine coronavirus causing systemic disease and lymphopenia. Vet. Microbiol, 128:253-260.
  • Decaro, N., Martella, V., Saif, L.J., Buonavoglia, C. (2020). COVID-19 from veterinary medicine and one health perspectives: What animal coronaviruses have taught us, Research in Veterinary Science, 131:21-23.
  • de Groot, R.J. (2012). Family Coronaviridae. Virus Taxonomy, ICTV, 806-820.
  • Delmas, B., Laude, H. (1990). Assembly of coronavirus spike protein into trimers and its role in epitope expression. Journal of virology, 64(11):5367-5375.
  • Denison, M.R. (2004). Coronavirus Research: Keys To Diagnosis, Treatment, and Prevention Of Sars. In: Institute of Medicine (US) Forum on Microbial Threats; Knobler S, Mahmoud A, Lemon S, et al., editors. Learning from SARS: Preparing for the Next Disease Outbreak: Workshop Summary. Washington (DC): National Academies Press (US); Available from: https://www.ncbi.nlm.nih.gov/books/NBK92477/
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  • Lau, S.K.P., Chan, J.F.W. (2015). Coronaviruses: emerging and re-emerging pathogens in humans and animals, Virology Journal, 12:209, DOI 10.1186/s12985-015-0432-z.
  • Li, F. (2015). Receptor recognition mechanisms of coronaviruses: a decade of structural studies. Journal of Virology, 89(4), 1954–1964. https://doi.org/10.1128/JVI.02615-14.
  • Li, F. (2016). Structure, Function, and Evolution of Coronavirus Spike Proteins, Annu Rev Virol, 3(1): 237-261. doi:10.1146/annurev-virology-110615-042301.
  • Licitra, B.N., Duhamel, G.E., Whittaker, G.R. (2014). Canine Enteric Coronaviruses: Emerging Viral Pathogens with Distinct Recombinant Spike Proteins, Viruses, 6:3363-3376; doi:10.3390/v6083363.
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  • Mac-Lachlan, N.J., Dubovi, E.J. (2017). Coronaviridae, Chapter 24, Fenner’s Veterinary Virology, 5th ed., pp: 435-461. Academic Press, London, UK., doi.org/10.1016/B978-0-12-800946-8.00024-6.
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CORONAVIRIDAE VİRUS AİLESİ: GENEL BİR DEĞERLENDİRME

Year 2020, Volume: 5 Issue: 1, 1 - 12, 30.04.2020

Hikmet Ün

Abstract

Coronaviruslar 30 kB genom büyüklüğüne sahip segmentsiz pozitif polariteli RNA viruslardır, kendilerine has replikasyon stratejileri elektrom mikroskop altındaki corona veya taç benzeri görüntüleri isimlendirilmelerine neden olmuştur. Coronaviruslar memeliler, kemirgenler ve kanatlılarda hafiften şiddetliye kadar değişen oranlarda enterit, pnömoni, ensefalit ve sistemik hastalık ile karakterize çeşitli hastalıklar oluşturur. Dünyada milyonlarca insan coronavirusların zoonotik taşınmasından dolayı risk altındadır. Bu makalede literatür gözden geçirilerek coronavirusların genel bir değerlendirmesi yapılmıştır.

Keywords

Nidovirales coronavirus positive polariteli RNA virusları hayvan coronavirusları insan coronavirusları

References

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  • Assiri, A., Al-Tawfiq, J.A., Al-Rabeeah, A.A., Al-Rabiah, F.A., Al-Hajjar, S., Al-Barrak, A., Flemban, H., Al-Nassir, W.N., Balkhy, H.H., Al-Hakeem, RF., Makhdoom, H.Q., Zumla, A.I., Memish, Z.A. (2013). Epidemiological, demographic, and clinical characteristics of 47 cases of Middle East respiratory syndrome coronavirus disease from Saudi Arabia: a descriptive study. Lanet Infect Dis, 13(9):752-61.
  • Cavanagh, D. (2005). Coronaviridae: a review of coronaviruses and toroviruses, Coronaviruses with Special Emphasis on First Insights Concerning SARS, ed. by A. Schmidt, M.H. Wolff and O. Weber, Birkhäuser Verlag Basel/Switzerland.
  • Cavanagh, D. (2007). Coronavirus avian infectious bronchitis virus. Veterinary Research, 38:281-297.
  • Decaro, N., Campolo, M., Lorusso, A., Desario, C., Mari, V., Colaianni, M.L., Elia, G., Martella, V., Buonavoglia, C. (2008). Experimental infection of dogs with a novel strain of canine coronavirus causing systemic disease and lymphopenia. Vet. Microbiol, 128:253-260.
  • Decaro, N., Martella, V., Saif, L.J., Buonavoglia, C. (2020). COVID-19 from veterinary medicine and one health perspectives: What animal coronaviruses have taught us, Research in Veterinary Science, 131:21-23.
  • de Groot, R.J. (2012). Family Coronaviridae. Virus Taxonomy, ICTV, 806-820.
  • Delmas, B., Laude, H. (1990). Assembly of coronavirus spike protein into trimers and its role in epitope expression. Journal of virology, 64(11):5367-5375.
  • Denison, M.R. (2004). Coronavirus Research: Keys To Diagnosis, Treatment, and Prevention Of Sars. In: Institute of Medicine (US) Forum on Microbial Threats; Knobler S, Mahmoud A, Lemon S, et al., editors. Learning from SARS: Preparing for the Next Disease Outbreak: Workshop Summary. Washington (DC): National Academies Press (US); Available from: https://www.ncbi.nlm.nih.gov/books/NBK92477/
  • Drexler, J.F., Corman, V.M., Drosten, C. (2014). Ecology, Evolution and Classification of Bat Coronaviruses in the Aftermath of SARS, Antiviral Research, 101: 45–56. Dudas, G., Carvalho, L.M., Rambaut, A., Bedford, T. (2018). MERS-CoV Spillover at the Camel-Human Interface, Elife, 7: pii: e31257. doi: 10.7554/eLife.31257. Dye, C., Helps, C.R., Siddell, S.G. (2008). Evaluation of real-time RT-PCR for the quantification of FCoV shedding in the faeces of domestic cats, J.Feline Med. Surg, 10 (2):167-174.
  • Fehr, A.R., Perlman, S. (2015). Coronaviruses: An Overview of Their Replication and Pathogenesis Methods Mol Biol, 1282: 1–23, doi:10.1007/978-1-4939-2438-7_1.
  • Gaunt, E.R., Hardie, A., Claas, E.C., Simmonds, P., Templeton, K.E. (2010). Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. Journal of clinical microbiology, 48(8):2940–2947.
  • Gorbalenya, A.E., Baker, S.C., Baric, R.S., de Groot, R.J., Drosten, C., Gulyaeva, A.A., Haagmans, B.L., Lauber, C., Leontovich, A.M., Neuman, B.W., Penzar, D., Perlman, S., Poon, L.L.M., Samborskiy, D.V., Sidorov, I.A., Sola, I., Ziebuhr, J. (2020). Severe acute respiratory syndrome-related coronavirus—The species and its viruses, a statement of the Coronavirus Study Group. https://doi.org/10.1101/2020.02.07.937862.
  • Hilgenfeld, R., Peiris, M. (2013). From SARS to MERS: 10 years of research on highly pathogenic human Coronaviruses, Antiviral Research, 100:286–295.
  • Hu, B., Ge, X., Wang, L., Shi, Z. (2015). Bat Origin of Human Coronaviruses, Virology Journal, 12:221, DOI 10.1186/s12985-015-0422-1.
  • Kipar, A., May, H., Menger, S., Weber, M., Leukert, W., Reinacher, M. (2005). Morphological features and development of granulomatous vasculitisin feline infectious peritonitis. Vet. Pathol, 42:321-330.
  • Lam, T.T., Shum, M.H., Zhu, H.C., Tong, Y.G., Ni, X.B., Liao, Y.S., Wei, W., Cheung, W.Y., Li, W.J., Li, L.F., Leung, G.M., Holmes, E.C., Hu, Y.L., Guan, Y. (2020). Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins, Nature, https://doi.org/10.1038/s41586-020-2169-0. 2020 Mar 26.
  • Lau, S.K.P., Chan, J.F.W. (2015). Coronaviruses: emerging and re-emerging pathogens in humans and animals, Virology Journal, 12:209, DOI 10.1186/s12985-015-0432-z.
  • Li, F. (2015). Receptor recognition mechanisms of coronaviruses: a decade of structural studies. Journal of Virology, 89(4), 1954–1964. https://doi.org/10.1128/JVI.02615-14.
  • Li, F. (2016). Structure, Function, and Evolution of Coronavirus Spike Proteins, Annu Rev Virol, 3(1): 237-261. doi:10.1146/annurev-virology-110615-042301.
  • Licitra, B.N., Duhamel, G.E., Whittaker, G.R. (2014). Canine Enteric Coronaviruses: Emerging Viral Pathogens with Distinct Recombinant Spike Proteins, Viruses, 6:3363-3376; doi:10.3390/v6083363.
  • Lu, R., Yu, X., Wang, W., Duan, X., Zhang, L., Zhou, W., Xu, J., Xu, L., Hu, Q., Lu, J., Ruan, L., Wang, Z., Tan, W. (2012). Characterization of human coronavirus etiology in Chinese adults with adults with acute upper respiratory tract infection by real-time RT-PCR assays. PLoS One;7(6):e38638.
  • Leopardi, S., Holmes, E.C., Gastaldelli, M., Tassoni, L., Priori, P., Scaravelli, D., Zamperin, G., De Benedictis, P.. (2018). Interplay between co-divergence and cross-species transmission in the evolutionary history of bat coronaviruses. Infect. Genet. Evol, 2018;58:279–289. doi: 10.1016/j.meegid.2018.01.012.
  • Mac-Lachlan, N.J., Dubovi, E.J. (2017). Coronaviridae, Chapter 24, Fenner’s Veterinary Virology, 5th ed., pp: 435-461. Academic Press, London, UK., doi.org/10.1016/B978-0-12-800946-8.00024-6.
  • Nieto-Torres, J.L., Dediego, M.L., Verdia-Baguena, C., Jimenez-Guardeno, J.M., Regla-Nava, J.A., Fernandez-Delgado, R., Castano-Rodriguez, C., Alcaraz, A., Torres, J., Aguilella, V.M., Enjuanes, L. (2014). Severe acute respiratory syndrome coronavirus envelope protein ion channel activity promotes virus fitness and pathogenesis. PLoS pathogens, 10(5):1004077.
  • Phan My, V.T., Tri, T.N., Anh, P.H., Baker, S., Vizions Consortium, Kellam, P., Cotten, M. (2018). Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains, Virus Evolution, 4(2): vey035, doi: 10.1093/ve/vey035.
  • Poutanen, SM. (2018). Human Coronaviruses. Principles and Practice of Pediatric Infectious Diseases, 1148–1152.e3. https://doi.org/10.1016/B978-0-323-40181-4.00222-X.
  • Siddell, S.G., Walker., P.J., Lefkowitz, E.J., Mushegian, A.R., Adams, M.J., Dutilh, B.E., Gorbalenya, A.E., Harrach, B., Harrison, R.L., Junglen, S., Knowles, N.J., Kropinski, A.M., Krupovic, M., Kuhn, J.H., Nibert, M., Rubino, L., Sabanadzovic, S., Sanfaçon, H., Simmonds, P., Varsani, A., Zerbini, F.M., Davison, A.J. (2019). Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses. Arch Virol, 164:943-946. https://doi.org/10.1007/s00705-018-04136-2.
  • Su, S., Wong, G., Shi, W., Liu, J., Lai, A.C.K., Zhou, J., Liu, W., Bi, Y., Gao, G.F. (2016). Epidemiology, Genetic Recombination, and Pathogenesis of Coronaviruses Trends in Microbiology, Vol. 24, No. 6, http://dx.doi.org/10.1016/j.tim.2016.03.003.
  • Thiel, V. (2007). Coronaviruses : molecular and cellular biology. Caister Academic Press, Norfolk, UK.
  • URL1. https://talk.ictvonline.org/taxonomy/, erişim tarihi: 03.03.3020.
  • URL2. https://www.wsj.com/articles/what-we-know-about-the-wuhan-virus-11579716128, erişim tarihi: 08.03.3020.
  • URL3. Coronavirinae in ViralZone, https://viralzone.expasy.org/785, erişim tarihi: 08.03.3020.
  • URL4. https://talk.ictvonline.org, erişim tarihi: 08.03.3020.
  • URL5. https://www.who.int/csr/sars/en/, erişim tarihi: 11.04.3020.
  • Vijaykrishna, D., Smith, G.J., Zhang, J.X., Peiris, J.S., Chen, H., Guan, Y. (2007). Evolutionary insights into the ecology of coronaviruses. Journal of Virology, 81(8):4012-4020. https://doi.org/10.1128/JVI.02605-06
  • Vijgen, L., Keyaerts, E., Moës, E., Thoelen, I., Wollants, E., Lemey, P., Vandamme, A.M., Van Ranst, M. (2005). Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. Journal of Virology, 79(3):1595-1604. https://doi.org/10.1128/JVI.79.3.1595-1604.2005.
  • Wang, Q., Vlasova, A.N., Kenney, S.P., Saif, L.J. (2019). Emerging and re-emerging coronaviruses in pigs. Curr. Opi. Virol, 34:39-49.
  • Wang, L., Wang, Y., Ye, D., Liu, Q. (2020). A review of the 2019 Novel Coronavirus (COVID-19) based on current evidence, International Journal of Antimicrobial Agents, Available online 19 March 2020, 105948, doi.org/10.1016/j.ijantimicag.2020.105948.
  • Weiss, S.R., Leibowitz, J.L. (2011). Coronavirus Pathogenesis, Advances in Virus Research, Volume 81: 86-136. DOI: 10.1016/B978-0-12-385885-6.00009-2
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There are 48 citations in total.

Details

Primary Language Turkish
Subjects Veterinary Surgery
Journal Section Editorial
Authors

Hikmet Ün 0000-0003-2054-7823

Publication Date April 30, 2020
Submission Date April 25, 2020
Acceptance Date April 29, 2020
Published in Issue Year 2020 Volume: 5 Issue: 1

Cite

APA Ün, H. (2020). CORONAVIRIDAE VİRUS AİLESİ: GENEL BİR DEĞERLENDİRME. Journal of Advances in VetBio Science and Techniques, 5(1), 1-12.
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